RetrogeneDB ID: | retro_sscr_557 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 16:76448058..76448378(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPA2 | ||
Ensembl ID: | ENSSSCG00000022365 | ||
Aliases: | None | ||
Description: | pyrophosphatase (inorganic) 2 [Source:HGNC Symbol;Acc:28883] |
Percent Identity: | 65.74 % |
Parental protein coverage: | 97.27 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | VEVPRWTNAKMEIATEEPLNPI-KQDVKNGKLRYVANIFPHKGYIWNYGALPQTWEDPHRKDESTDCCGD |
VEVPRWTNAK.EIA.EEPLNP..KQD....KL.....IFPHKG..W..G.LPQT.ED...K..S.DCCGD | |
Retrocopy | VEVPRWTNAKREIAMEEPLNPV<KQDGNEAKLCCMTSIFPHKGHMWS*GGLPQT*EDSC*KEKSADCCGD |
Parental | NDPIDVCEIGSKVLSRGEVVHVKILGILALIDQGETDW |
N.P.D.CE.G.KVLS.G.VVHVK.L..L.LIDQ.ETDW | |
Retrocopy | NNPVDLCETGAKVLSLGDVVHVKSLATLVLIDQSETDW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 0 .80 RPM |
SRP014902_testis | 0 .00 RPM | 7 .21 RPM |
SRP018288_heart | 0 .00 RPM | 10 .14 RPM |
SRP018288_kidney | 0 .00 RPM | 15 .47 RPM |
SRP018288_liver | 0 .00 RPM | 20 .47 RPM |
SRP018288_lung | 0 .00 RPM | 2 .14 RPM |
SRP018856_adipose | 0 .00 RPM | 5 .91 RPM |
SRP035408_brain | 0 .06 RPM | 13 .66 RPM |
SRP035408_liver | 0 .00 RPM | 44 .33 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000010887 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008731 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000014816 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017004 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000020635 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005941 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000007086 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022365 | 1 retrocopy |
retro_sscr_557 ,
|
Tursiops truncatus | ENSTTRG00000003141 | 2 retrocopies |