RetrogeneDB ID: | retro_ocun_1646 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018740:101161..101770(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000008407 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.5 % |
Parental protein coverage: | 81.93 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVS-PKVRKVLQLLR |
ARRKLIYEK.K.YHKEYRQMYRTEIRMARMARKAGNF..PAEPKLAFVIRIRG.NGVS.PK..K...... | |
Retrocopy | ARRKLIYEKVKYYHKEYRQMYRTEIRMARMARKAGNFHLPAEPKLAFVIRIRGTNGVS>PKSEKCCSFFA |
Parental | LRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNTLIARSLGKYN |
......GTFVKLNKASINMLRIVEPYI.WGYPNLKSVNELIYK.GYGKINK..IAL..NTLIA.SLGKYN | |
Retrocopy | FARSY-GTFVKLNKASINMLRIVEPYIVWGYPNLKSVNELIYKCGYGKINKN*IALPENTLIACSLGKYN |
Parental | IICMEDLIHEIYTVGKHFKEANNF-LWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
IIC..DL.HEIYTVGK.FKEANNF.LWPFKLSS..GGMKKKTTHFVEGGDAGNREDQINRLIRRMN | |
Retrocopy | IICVDDLMHEIYTVGKCFKEANNF<LWPFKLSSAHGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 179 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 399 .55 RPM |
SRP017611_liver | 0 .00 RPM | 123 .63 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000017654 | 15 retrocopies | |
Latimeria chalumnae | ENSLACG00000003571 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000017110 | 10 retrocopies | |
Macropus eugenii | ENSMEUG00000016319 | 9 retrocopies | |
Monodelphis domestica | ENSMODG00000007136 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003844 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008407 | 12 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009292 | 10 retrocopies | |
Sus scrofa | ENSSSCG00000006182 | 3 retrocopies |