RetrogeneDB ID: | retro_ocun_1734 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018829:221970..222427(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OCIAD2 | ||
Ensembl ID: | ENSOCUG00000007907 | ||
Aliases: | None | ||
Description: | OCIA domain containing 2 [Source:HGNC Symbol;Acc:28685] |
Percent Identity: | 75.8 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MASMSTHESQENGPHLPPLNKKSLLFCPKSKLHIHKGEIAKIIRECQEESFWKRALPFSLVSMLVTQGLV |
MAS.STHES.E..PH.PPLNKKSLLFCPKS...I..GE.AKI..ECQ..S.WK.AL..SLVS.LVTQGLV | |
Retrocopy | MASVSTHESREKSPHWPPLNKKSLLFCPKSEPRIQNGEAAKI*-ECQGQSLWKTALT-SLVSSLVTQGLV |
Parental | HQGYLAANPRFGSLPKVALAGILGFGLGKASYI-GVCQSKFHSFENQLRGAGFGPHHNR-HCLLTCEECK |
HQGYLAANPR.GSLPKVALAGILG.G.GKASY..GVCQSKFHSFENQL.GAG..PHHNR..CLL.CE.CK | |
Retrocopy | HQGYLAANPRSGSLPKVALAGILGLGPGKASYM<GVCQSKFHSFENQL*GAGYSPHHNRLTCLLKCEKCK |
Parental | TRHGLNQK-GDSQPSAS |
TR..L.QK.G.SQP.AS | |
Retrocopy | TRRRLSQK<GNSQPAAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 76 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 385 .56 RPM |
SRP017611_liver | 0 .00 RPM | 126 .87 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018637 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006759 | 1 retrocopy | |
Homo sapiens | ENSG00000145247 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013778 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006147 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014869 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000025531 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017430 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000007907 | 2 retrocopies |
retro_ocun_1734 , retro_ocun_1780,
|
Otolemur garnettii | ENSOGAG00000011039 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014722 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016048 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000011765 | 1 retrocopy |