RetrogeneDB ID: | retro_vpac_331 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_925:170828..171125(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OCIAD2 | ||
Ensembl ID: | ENSVPAG00000011765 | ||
Aliases: | None | ||
Description: | OCIA domain containing 2 [Source:HGNC Symbol;Acc:28685] |
Percent Identity: | 89.9 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LPFSLVSMLVTQGLVHQGYLAANPRFGSLPKVALAGILGFGLGKASYIRVCQSKFHVFEDQLRGAGFGPG |
LPFSL.SMLVTQGLVHQGYLAANPRFGSLPKV.L...LGFGLG.ASYIRVCQSKFH.FED.L.GAGFGP. | |
Retrocopy | LPFSLISMLVTQGLVHQGYLAANPRFGSLPKVTLVSVLGFGLGTASYIRVCQSKFHSFEDKLCGAGFGPA |
Parental | HNRHCLLTCEECKIKHGLSEEGRSQPSAS |
HNRHCLLTCEECKIKHGLSEEGRSQPSAS | |
Retrocopy | HNRHCLLTCEECKIKHGLSEEGRSQPSAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018637 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006759 | 1 retrocopy | |
Homo sapiens | ENSG00000145247 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013778 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006147 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014869 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000025531 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017430 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000007907 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000011039 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014722 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016048 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000011765 | 1 retrocopy |
retro_vpac_331 ,
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