RetrogeneDB ID: | retro_hsap_4082 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 8:81480281..81480741(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000253760 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OCIAD2 | ||
Ensembl ID: | ENSG00000145247 | ||
Aliases: | None | ||
Description: | OCIA domain containing 2 [Source:HGNC Symbol;Acc:28685] |
Percent Identity: | 76.92 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MASASARGNQDKDAHFPPPSKQSLLFCPKS-KLHIHRAEISKIMRECQEESFWKRALPFSLVSMLVTQGL |
M...S..GNQ.K..H.PPPSKQ.LLF.PKS.KLHIHR.EIS.I.R.CQEESFWKRALPFS.VSML.TQGL | |
Retrocopy | MPPISTHGNQEKGPHLPPPSKQRLLFYPKS<KLHIHRGEISNIIRGCQEESFWKRALPFSPVSMLITQGL |
Parental | VYQGYLAANSRFGSLPKVALAGLL-GFGLGKVSYIGVCQSKFHFFEDQLRGAGFGPQHNRHCLLTCEECK |
V.QGYLAAN.RFGSLP.V.L.G.L.G.GLGKVSYI.VCQSKFHFFEDQL.GA.FGPQ.NRH.LLTCEECK | |
Retrocopy | VCQGYLAANPRFGSLPEVTLVGIL<GIGLGKVSYIRVCQSKFHFFEDQLHGADFGPQQNRH*LLTCEECK |
Parental | IKHGLSEKGDSQPSAS |
IKHG..EK..SQP.AS | |
Retrocopy | IKHGFNEKRSSQPLAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 9 .90 RPM |
bodymap2_adrenal | 0 .00 RPM | 15 .58 RPM |
bodymap2_brain | 0 .00 RPM | 17 .86 RPM |
bodymap2_breast | 0 .00 RPM | 11 .19 RPM |
bodymap2_colon | 0 .00 RPM | 16 .28 RPM |
bodymap2_heart | 0 .00 RPM | 5 .65 RPM |
bodymap2_kidney | 0 .00 RPM | 40 .35 RPM |
bodymap2_liver | 0 .04 RPM | 28 .09 RPM |
bodymap2_lung | 0 .00 RPM | 11 .16 RPM |
bodymap2_lymph_node | 0 .00 RPM | 14 .91 RPM |
bodymap2_ovary | 0 .00 RPM | 9 .97 RPM |
bodymap2_prostate | 0 .17 RPM | 17 .04 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 1 .69 RPM |
bodymap2_testis | 0 .02 RPM | 10 .22 RPM |
bodymap2_thyroid | 0 .00 RPM | 27 .49 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 17 .13 RPM |
Species | RetrogeneDB ID |
---|---|
Macaca mulatta | retro_mmul_2353 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018637 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006759 | 1 retrocopy | |
Homo sapiens | ENSG00000145247 | 1 retrocopy |
retro_hsap_4082 ,
|
Gorilla gorilla | ENSGGOG00000013778 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006147 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014869 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000025531 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017430 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000007907 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000011039 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014722 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016048 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000011765 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |