RetrogeneDB ID: | retro_ocun_407 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:159632680..159633397(-) | ||
Located in intron of: | ENSOCUG00000000761 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000007501 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.93 % |
Parental protein coverage: | 96.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAPKRPSLLLPHAKKPRAAPGPRPADTSASRGLLTCEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQ |
MAPKRPS.LLPHAKKPRAAPGPRPADTSASRGLLT.EKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQ | |
Retrocopy | MAPKRPSSLLPHAKKPRAAPGPRPADTSASRGLLTGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQ |
Parental | KYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQGLVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDF |
KYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQ..VSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDF | |
Retrocopy | KYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQ--VSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDF |
Parental | YFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDH |
YFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDH | |
Retrocopy | YFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDH |
Parental | SDAGADELGEVIKDDIWPNPLQYYLVPDMDE |
SDAGADELGEVIKDDIWPNPLQYYLVPDMD. | |
Retrocopy | SDAGADELGEVIKDDIWPNPLQYYLVPDMDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 56 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 50 .78 RPM |
SRP017611_liver | 0 .00 RPM | 22 .04 RPM |