RetrogeneDB ID: | retro_itri_603 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393305.1:3251227..3251934(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000010546 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.31 % |
Parental protein coverage: | 83.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAPKRQSSLQSQTKKPKLPAAPEKANSSASLGLPKGEKE-QQEAIEHIDEVQNEIDRLNEQASEEILKVE |
MAPKRQS.LQSQTKKPKL.AAPEKAN.SASLGLPKGEKE.QQEAIEHI.EVQNEIDRLNEQASEEILK.E | |
Retrocopy | MAPKRQSLLQSQTKKPKLLAAPEKANPSASLGLPKGEKE>QQEAIEHINEVQNEIDRLNEQASEEILKGE |
Parental | QKYNKLRQPFFQKRSELIAKIPNFW-VTTFVNHPQGLVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRI |
QKYNKL.QPFFQKRSELI.KIPNFW.VTTFVNHPQ..VSALLGEEDEEALHYLTR.EVTEFEDIKSGYRI | |
Retrocopy | QKYNKLCQPFFQKRSELITKIPNFW>VTTFVNHPQ--VSALLGEEDEEALHYLTRAEVTEFEDIKSGYRI |
Parental | DFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFT |
DFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQ.QNKASR.RQH.EPESFFTWFT | |
Retrocopy | DFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQMQNKASR*RQHKEPESFFTWFT |
Parental | DHSDAGADELGEVIKDDIWPNPLQYYLVP |
DHSDA.ADELGEVIKDDIWPNPLQYYLVP | |
Retrocopy | DHSDADADELGEVIKDDIWPNPLQYYLVP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |