RetrogeneDB ID: | retro_btau_1556 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 7:11822488..11822921(-) | ||
Located in intron of: | ENSBTAG00000003528 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.64623 | ||
Ensembl ID: | ENSBTAG00000020959 | ||
Aliases: | None | ||
Description: | protein SET [Source:RefSeq peptide;Acc:NP_001033653] |
Percent Identity: | 86.58 % |
Parental protein coverage: | 57.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | FWVTTFVN-HPQVSALLGEEDEEALHY-LTRVEVTEF-EDIKSGYRIDFYFDENPYFENKILSKEFHLNE |
F.VT.F.N.HPQVSALLGEE.EE.LHY.LTRVE.TE..EDIKSGYRIDFYFDENPYFENKILSKEFHLNE | |
Retrocopy | FGVTAFDN>HPQVSALLGEEGEESLHY<LTRVELTEL<EDIKSGYRIDFYFDENPYFENKILSKEFHLNE |
Parental | SGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDI-WPNP |
SGDPSSKS.EIKWKSG.D..K.SSQTQNKASRKRQH.EPESFFT.FTDHSDAG.DELGEVIKDDI..PNP | |
Retrocopy | SGDPSSKSAEIKWKSGQD*MKQSSQTQNKASRKRQHQEPESFFT*FTDHSDAGTDELGEVIKDDI<LPNP |
Parental | LQYYLVPDM |
LQYYLVPDM | |
Retrocopy | LQYYLVPDM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 33 .31 RPM |
ERP005899_muscle | 0 .00 RPM | 123 .58 RPM |
SRP017611_brain | 0 .00 RPM | 47 .14 RPM |
SRP017611_kidney | 0 .00 RPM | 67 .87 RPM |
SRP017611_liver | 0 .08 RPM | 40 .47 RPM |
SRP030211_testis | 0 .01 RPM | 94 .67 RPM |