RetrogeneDB ID: | retro_mmul_2614 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:91698779..91699484(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.192 | ||
Ensembl ID: | ENSMMUG00000008532 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.62 % |
Parental protein coverage: | 81.03 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAPKRQSPLLPQKKKPRPPPALGPEETSASAGLPKKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVE |
MAPK.QS.LLPQK.KPRPPPALGPEET.ASAGLPKKGEKEQQEAIEHIDEVQNEIDRLNEQASE.ILKVE | |
Retrocopy | MAPKGQSSLLPQKNKPRPPPALGPEETPASAGLPKKGEKEQQEAIEHIDEVQNEIDRLNEQASEAILKVE |
Parental | QKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFY |
QKYNKL.QPFFQKRSELIAKIPNFWVTTFVNHPQVSAL.G.EDEEALHYLTRVEVTEFEDIKSGYRI.FY | |
Retrocopy | QKYNKLHQPFFQKRSELIAKIPNFWVTTFVNHPQVSALFGKEDEEALHYLTRVEVTEFEDIKSGYRINFY |
Parental | FDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS |
FDENPYF.NKVLSKEFHL.ESGDPSSKSTEIKWKSGKDL.KRSSQTQNKASRKRQHEEPE.FFTWFTDHS | |
Retrocopy | FDENPYF*NKVLSKEFHLSESGDPSSKSTEIKWKSGKDLMKRSSQTQNKASRKRQHEEPENFFTWFTDHS |
Parental | DAGADELGEVIKDDIWPNPLQYYLV |
DAGADELGE.IKDDIWPNPLQ.YLV | |
Retrocopy | DAGADELGEAIKDDIWPNPLQNYLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 51 .10 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 47 .36 RPM |
SRP007412_cerebellum | 0 .13 RPM | 49 .21 RPM |
SRP007412_heart | 0 .12 RPM | 40 .04 RPM |
SRP007412_kidney | 0 .23 RPM | 39 .20 RPM |
SRP007412_liver | 0 .00 RPM | 11 .68 RPM |
SRP007412_testis | 0 .04 RPM | 20 .69 RPM |