RetrogeneDB ID: | retro_ocun_611 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 13:50308293..50308693(+) | ||
Located in intron of: | ENSOCUG00000003778 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL6 | ||
Ensembl ID: | ENSOCUG00000029293 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 6 [Source:HGNC Symbol;Acc:13210] |
Percent Identity: | 86.57 % |
Parental protein coverage: | 71.51 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | NIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDKLRMVVAKEELD-TLLNHPDIKHRR |
..EKFKSSSL.FTV.D...QG.YRNLWEH.YKEGQAIIFVIDSS.KLRMVVAKEELD.TLLNH.DIKH.R | |
Retrocopy | SVEKFKSSSLFFTVLDT*AQGGYRNLWEHWYKEGQAIIFVIDSSGKLRMVVAKEELD>TLLNHADIKHHR |
Parental | IPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQAVKT |
IPIL.F.NKMDLRDAVTSVKVSQLLCLENIK.KP.HICASDAIKGEGLQEGVDWLQDQ.QAVKT | |
Retrocopy | IPILLFTNKMDLRDAVTSVKVSQLLCLENIKNKP*HICASDAIKGEGLQEGVDWLQDQTQAVKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .17 RPM | 12 .75 RPM |
SRP017611_kidney | 0 .41 RPM | 9 .83 RPM |
SRP017611_liver | 0 .46 RPM | 0 .62 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryctolagus cuniculus | ENSOCUG00000002217 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000014876 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000029293 | 1 retrocopy |
retro_ocun_611 ,
|
Rattus norvegicus | ENSRNOG00000001689 | 1 retrocopy |