RetrogeneDB ID: | retro_ocun_465 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 11:28309549..28309899(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL1 | ||
Ensembl ID: | ENSOCUG00000002217 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 1 [Source:HGNC Symbol;Acc:692] |
Percent Identity: | 84.03 % |
Parental protein coverage: | 62.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELR-KAILVVFANKQDM |
KFQVWDLG.QTSIRPY.RCYYSNTDAVI.V.DSCD.DR..ISKSELVA.LE.EELR.KAILVVFA.KQDM | |
Retrocopy | KFQVWDLG-QTSIRPYGRCYYSNTDAVI*VADSCDGDRTEISKSELVALLEKEELR<KAILVVFAKKQDM |
Parental | EQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS |
EQA.TPSEMA.S.GLPALKD.KWQIFKTS.TKGTGL.EAME.LVETLK. | |
Retrocopy | EQALTPSEMADSRGLPALKDGKWQIFKTSTTKGTGLAEAMECLVETLKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 29 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 28 .99 RPM |
SRP017611_liver | 0 .00 RPM | 6 .55 RPM |