RetrogeneDB ID: | retro_ocun_1608 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018715:986933..987375(-) | ||
Located in intron of: | ENSOCUG00000004407 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL1 | ||
Ensembl ID: | ENSOCUG00000002217 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 1 [Source:HGNC Symbol;Acc:692] |
Percent Identity: | 55.56 % |
Parental protein coverage: | 79.37 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | SSLFGTREMRILILGLDGAGKT-TILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW |
S..FGT...RI.IL.LDG.G.T...LY.LQ.G.V..T.P..GFN.ETVT..NLK...WD.GGQT.IRPY. | |
Retrocopy | SGRFGT---RIFILVLDGGGET>STLYGLQAGGVTATVPAVGFNGETVTHDNLKC*AWDSGGQTRIRPYR |
Parental | RCYYSNTDAVIYVVDSCDRDRIGISKS-ELVAMLEEEELRK-AILVVFANKQDMEQAMTPSEMANSLGLP |
R.YYSNT.A...VVD.CD.DR.GISKS....A.LEE...RK.A..VV.A.KQD..QA..P.EMAN..GLP | |
Retrocopy | RRYYSNTEAGFCVVDGCD*DRTGISKS<KSAATLEEDGVRK>ATSVVAADKQDVQQARPP*EMANPPGLP |
Parental | ALKDRKWQIFKTS |
........I...S | |
Retrocopy | TSQIQRGTIQNSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 29 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 28 .99 RPM |
SRP017611_liver | 0 .00 RPM | 6 .55 RPM |