RetrogeneDB ID: | retro_ocun_400 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:148042291..148042727(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL1 | ||
Ensembl ID: | ENSOCUG00000002217 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 1 [Source:HGNC Symbol;Acc:692] |
Percent Identity: | 67.32 % |
Parental protein coverage: | 79.37 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 2 |
Parental | KTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNT-DAVIYVVDSCDRD |
KTTILYR...GE.VTTIPTIGFN.E.VT.KNLKFQVWDLG.QT...P.WR.YYSN...AVIYVV.SCD.. | |
Retrocopy | KTTILYRS*IGEAVTTIPTIGFNIEIVT*KNLKFQVWDLG-QTRVMPHWR-YYSNI<NAVIYVVHSCD*E |
Parental | RIGISKSELVAMLEE-EELRKAILVVFANKQDMEQAMTPSEMANSLGL-PALKDRKWQIFKTSATKGTGL |
...ISKSELV.ML.E..ELR..I.VVF.NKQD..QAMT.SEMA.S....PA.KD.KW.IFKTSAT...GL | |
Retrocopy | *PAISKSELVPMLAE<KELRNSISVVFVNKQDR*QAMTLSEMAKSSHR*PAFKD*KWKIFKTSAT---GL |
Parental | DEAMEWLVETLKS |
..AM..L..TLKS | |
Retrocopy | HKAMKCLAGTLKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 29 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 28 .99 RPM |
SRP017611_liver | 0 .00 RPM | 6 .55 RPM |