RetrogeneDB ID: | retro_ocun_764 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:99329486..99329796(-) | ||
Located in intron of: | ENSOCUG00000009483 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS12 | ||
Ensembl ID: | ENSOCUG00000001606 | ||
Aliases: | None | ||
Description: | ribosomal protein S12 [Source:HGNC Symbol;Acc:10385] |
Percent Identity: | 56.76 % |
Parental protein coverage: | 82.58 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAE-HQINLIKVDDNKKLGEWVGLC |
T..IH..LARGI.EA....DK.....CV.A.NCD.P........L......INL.KVD..KKLGE.VGLC | |
Retrocopy | TIFIHSDLARGICEA----DKVLGPACVPAYNCDKPTLFQAGGVLLCQ<NTINLTKVDV-KKLGE*VGLC |
Parental | KIDREGKPRKVVGCSCVVVKDYGKESQAK-DVIEEYFKCKK |
K....GK...VVGCSCV.VKD.GKESQAK..V.EEYFK.KK | |
Retrocopy | KSEQKGKSCRVVGCSCVLVKDHGKESQAK<KVMEEYFKAKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .28 RPM | 110 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 373 .70 RPM |
SRP017611_liver | 0 .08 RPM | 53 .26 RPM |