RetrogeneDB ID: | retro_ptro_1203 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 17:4729151..4729546(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS12 | ||
Ensembl ID: | ENSPTRG00000018618 | ||
Aliases: | None | ||
Description: | Pan troglodytes ribosomal protein S12 (RPS12), mRNA. [Source:RefSeq mRNA;Acc:NM_001252509] |
Percent Identity: | 92.48 % |
Parental protein coverage: | 99.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AEEGIAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEP-MYVKLVEA-LC |
AEEGIAAGGVMDV.TALQEVLKTALIH..LARGIREAAKALDKRQAHLCVLASN..EP.MYVKLVEA.LC | |
Retrocopy | AEEGIAAGGVMDVSTALQEVLKTALIHHDLARGIREAAKALDKRQAHLCVLASNYHEPTMYVKLVEA<LC |
Parental | AEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCKK |
AEHQINLIKVDD.KKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQA.DVIEEY.KCKK | |
Retrocopy | AEHQINLIKVDDHKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAEDVIEEYLKCKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .13 RPM | 180 .07 RPM |
SRP007412_cerebellum | 0 .18 RPM | 84 .75 RPM |
SRP007412_heart | 0 .15 RPM | 79 .60 RPM |
SRP007412_kidney | 0 .50 RPM | 293 .11 RPM |
SRP007412_liver | 0 .13 RPM | 168 .52 RPM |
SRP007412_testis | 0 .11 RPM | 63 .12 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1797 |
Gorilla gorilla | retro_ggor_1322 |
Pongo abelii | retro_pabe_1475 |