Parental gene:

RPS12, ENSGGOG00000012234

Aliases:None
Description:40S ribosomal protein S12 [Source:UniProtKB/TrEMBL;Acc:G3R953]
Organism:Gorilla (Gorilla gorilla)
Coordinates:6:133443984..133446975(+)


>ENSGGOG00000012234
ATGGCCGAGGAAGGCATTGTTGCTGGAGGTGTAATGGACGTTAATACTGCTTTACAAGAGGTTCTGAAGACCGCCCTCAT
CCACGATGGCCTAGCACGTGGAATTCGCGAAGCTGCCAAAGCCTTAGACAAGCGCCAAGCCCATCTTTGTGTGCTTGCAT
CCAACTGTGATGAGCCTATGTATGTCAAGTTGGTGGAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAGGTTGAT
GACAACAAGAAACTAGGAGAATGGGTAGGCCTTTGTAAAATTGACAGAGAGGGGAAACCCCGTAAAGTGGTTGGTTGCAG
TTGTGTAGTAGTTAAGGACTATGGCAAGGAGTCTCAGGCCAAGGATGTCATCGAAGAGTATTTCAAATGCAAGAAATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 61 .24 RPM
SRP007412_cerebellum 68 .83 RPM
SRP007412_heart 45 .22 RPM
SRP007412_kidney 197 .78 RPM
SRP007412_liver 246 .53 RPM
SRP007412_testis 134 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000010479 ortholog_one2many 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000008015 possible_ortholog 2 retrogenes
Bos taurus ENSBTAG00000001360 ortholog_one2one 7 retrogenes
Canis familiaris ENSCAFG00000000190 possible_ortholog 15 retrogenes
Callithrix jacchus ENSCJAG00000002865 possible_ortholog 34 retrogenes
Cavia porcellus ENSCPOG00000000429 ortholog_one2one 4 retrogenes
Dasypus novemcinctus ENSDNOG00000006214 ortholog_one2one 31 retrogenes
Equus caballus ENSECAG00000001599 ortholog_one2one 8 retrogenes
Echinops telfairi ENSETEG00000006854 ortholog_one2one 14 retrogenes
Felis catus ENSFCAG00000028402 possible_ortholog 7 retrogenes
Homo sapiens ENSG00000112306 possible_ortholog 26 retrogenes
Gadus morhua ENSGMOG00000019455 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000007933 ortholog_one2one 11 retrogenes
Macropus eugenii ENSMEUG00000004285 possible_ortholog 1 retrogene
Microcebus murinus ENSMICG00000005252 possible_ortholog 5 retrogenes
Myotis lucifugus ENSMLUG00000001137 possible_ortholog 5 retrogenes
Macaca mulatta ENSMMUG00000013237 possible_ortholog 1 retrogene
Monodelphis domestica ENSMODG00000017520 possible_ortholog 1 retrogene
Mustela putorius furo ENSMPUG00000014771 ortholog_one2one 1 retrogene
Mus musculus ENSMUSG00000061983 possible_ortholog 1 retrogene
Nomascus leucogenys ENSNLEG00000014611 possible_ortholog 4 retrogenes
Oryctolagus cuniculus ENSOCUG00000001606 ortholog_one2one 14 retrogenes
Otolemur garnettii ENSOGAG00000001309 ortholog_one2one 20 retrogenes
Pongo abelii ENSPPYG00000017020 possible_ortholog 26 retrogenes
Pelodiscus sinensis ENSPSIG00000003457 ortholog_one2many 1 retrogene
Pan troglodytes ENSPTRG00000018618 ortholog_one2one 25 retrogenes
Pteropus vampyrus ENSPVAG00000017201 ortholog_one2one 12 retrogenes
Rattus norvegicus ENSRNOG00000016411 ortholog_one2one 5 retrogenes
Sorex araneus ENSSARG00000003170 possible_ortholog 2 retrogenes
Sarcophilus harrisii ENSSHAG00000008905 possible_ortholog 6 retrogenes
Sus scrofa ENSSSCG00000004177 possible_ortholog 8 retrogenes
Tarsius syrichta ENSTSYG00000010097 possible_ortholog 24 retrogenes
Tursiops truncatus ENSTTRG00000000609 possible_ortholog 11 retrogenes
Vicugna pacos ENSVPAG00000010082 possible_ortholog 4 retrogenes
Vicugna pacos ENSVPAG00000011504 possible_ortholog 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_139 90.98 100.00
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2. retro_ggor_530 83.87 69.70
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3. retro_ggor_595 84.95 69.70
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4. retro_ggor_673 71.43 100.00
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5. retro_ggor_724 96.21 100.00
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6. retro_ggor_971 87.79 98.48
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7. retro_ggor_1164 85.71 100.00
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8. retro_ggor_1287 83.75 59.85
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9. retro_ggor_1322 93.94 99.24
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10. retro_ggor_1426 91.11 100.00
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11. retro_ggor_1441 66.14 94.70
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12. retro_ggor_1686 84.44 100.00
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13. retro_ggor_1861 61.22 72.73
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14. retro_ggor_1894 73.49 62.12
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15. retro_ggor_2115 76.12 100.00
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16. retro_ggor_2241 73.91 68.94
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17. retro_ggor_2261 72.41 87.12
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18. retro_ggor_2339 65.69 100.00
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19. retro_ggor_2456 73.88 100.00
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20. retro_ggor_2489 88.72 100.00
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21. retro_ggor_2680 62.07 65.15
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22. retro_ggor_3076 75.00 71.97
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Download FASTA sequences of all ENSGGOG00000012234 retrocopies