Parental gene:

RPS12, ENSPTRG00000018618

Aliases:None
Description:Pan troglodytes ribosomal protein S12 (RPS12), mRNA. [Source:RefSeq mRNA;Acc:NM_001252509]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:134126631..134129631(+)


>ENSPTRG00000018618
ATGGCCGAGGAAGGCATTGCTGCTGGAGGTGTAATGGACGTTAATACTGCTTTACAAGAGGTTCTGAAGACCGCCCTCAT
CCACGATGGCCTAGCACGTGGAATTCGCGAAGCTGCCAAAGCCTTAGACAAGCGCCAAGCCCATCTTTGTGTGCTTGCAT
CCAACTGTGATGAGCCTATGTATGTCAAGTTGGTGGAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAGGTTGAT
GACAACAAGAAACTAGGAGAATGGGTAGGCCTTTGTAAAATTGACAGAGAGGGGAAACCCCGTAAAGTGGTTGGTTGCAG
TTGTGTAGTAGTTAAGGACTATGGCAAGGAGTCTCAGGCCAAGGATGTCATCGAAGAGTATTTCAAATGCAAGAAATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 180 .07 RPM
SRP007412_cerebellum 84 .75 RPM
SRP007412_heart 79 .60 RPM
SRP007412_kidney 293 .11 RPM
SRP007412_liver 168 .52 RPM
SRP007412_testis 63 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000010479 ortholog_one2one 1 retrogene
retro_acar_102,
Ailuropoda melanoleuca ENSAMEG00000008015 possible_ortholog 2 retrogenes
retro_amel_79, retro_amel_92,
Bos taurus ENSBTAG00000001360 ortholog_one2one 7 retrogenes
retro_btau_106, retro_btau_1097, retro_btau_1306, retro_btau_1495, retro_btau_1514, retro_btau_1630, retro_btau_1802,
Callithrix jacchus ENSCJAG00000002865 possible_ortholog 34 retrogenes
retro_cjac_1038, retro_cjac_1044, retro_cjac_1205, retro_cjac_1291, retro_cjac_1528, retro_cjac_1602, retro_cjac_1778, retro_cjac_1994, retro_cjac_2039, retro_cjac_2058, retro_cjac_2065, retro_cjac_2101, retro_cjac_2112, retro_cjac_2155, retro_cjac_2337, retro_cjac_2406, retro_cjac_2421, retro_cjac_2461, retro_cjac_2681, retro_cjac_2694, retro_cjac_2858, retro_cjac_301, retro_cjac_3310, retro_cjac_4149, retro_cjac_427, retro_cjac_466, retro_cjac_494, retro_cjac_592, retro_cjac_773, retro_cjac_805, retro_cjac_806, retro_cjac_807, retro_cjac_836, retro_cjac_977,
Cavia porcellus ENSCPOG00000000429 ortholog_one2one 4 retrogenes
retro_cpor_1096, retro_cpor_304, retro_cpor_32, retro_cpor_380,
Dasypus novemcinctus ENSDNOG00000006214 ortholog_one2one 31 retrogenes
retro_dnov_1006, retro_dnov_1116, retro_dnov_1262, retro_dnov_1455, retro_dnov_1456, retro_dnov_1642, retro_dnov_1644, retro_dnov_1797, retro_dnov_1879, retro_dnov_1939, retro_dnov_1999, retro_dnov_2112, retro_dnov_2120, retro_dnov_2263, retro_dnov_2312, retro_dnov_2440, retro_dnov_2446, retro_dnov_2472, retro_dnov_2481, retro_dnov_2486, retro_dnov_2517, retro_dnov_2584, retro_dnov_2645, retro_dnov_328, retro_dnov_391, retro_dnov_427, retro_dnov_562, retro_dnov_57, retro_dnov_659, retro_dnov_700, retro_dnov_963,
Equus caballus ENSECAG00000001599 ortholog_one2one 8 retrogenes
retro_ecab_1012, retro_ecab_1131, retro_ecab_133, retro_ecab_744, retro_ecab_80, retro_ecab_828, retro_ecab_875, retro_ecab_959,
Echinops telfairi ENSETEG00000006854 ortholog_one2one 14 retrogenes
retro_etel_1129, retro_etel_1512, retro_etel_1580, retro_etel_2016, retro_etel_205, retro_etel_2082, retro_etel_2099, retro_etel_2169, retro_etel_26, retro_etel_280, retro_etel_29, retro_etel_55, retro_etel_578, retro_etel_915,
Felis catus ENSFCAG00000028402 possible_ortholog 7 retrogenes
retro_fcat_1084, retro_fcat_1314, retro_fcat_1446, retro_fcat_1880, retro_fcat_537, retro_fcat_664, retro_fcat_796,
Gorilla gorilla ENSGGOG00000012234 ortholog_one2one 22 retrogenes
retro_ggor_1164, retro_ggor_1287, retro_ggor_1322, retro_ggor_139, retro_ggor_1426, retro_ggor_1441, retro_ggor_1686, retro_ggor_1861, retro_ggor_1894, retro_ggor_2115, retro_ggor_2241, retro_ggor_2261, retro_ggor_2339, retro_ggor_2456, retro_ggor_2489, retro_ggor_2680, retro_ggor_3076, retro_ggor_530, retro_ggor_595, retro_ggor_673, retro_ggor_724, retro_ggor_971,
Gadus morhua ENSGMOG00000019455 ortholog_one2one 1 retrogene
retro_gmor_11,
Loxodonta africana ENSLAFG00000007933 ortholog_one2one 11 retrogenes
retro_lafr_1172, retro_lafr_154, retro_lafr_281, retro_lafr_429, retro_lafr_447, retro_lafr_494, retro_lafr_552, retro_lafr_653, retro_lafr_736, retro_lafr_807, retro_lafr_949,
Microcebus murinus ENSMICG00000005252 possible_ortholog 5 retrogenes
retro_mmur_1260, retro_mmur_1527, retro_mmur_391, retro_mmur_491, retro_mmur_98,
Myotis lucifugus ENSMLUG00000001137 possible_ortholog 5 retrogenes
retro_mluc_1479, retro_mluc_1552, retro_mluc_1987, retro_mluc_1988, retro_mluc_582,
Macaca mulatta ENSMMUG00000013237 possible_ortholog 1 retrogene
retro_mmul_12,
Mustela putorius furo ENSMPUG00000014771 ortholog_one2one 1 retrogene
retro_mputfur_6,
Mus musculus ENSMUSG00000061983 possible_ortholog 1 retrogene
retro_mmus_36,
Nomascus leucogenys ENSNLEG00000014611 possible_ortholog 4 retrogenes
retro_nleu_2717, retro_nleu_543, retro_nleu_588, retro_nleu_86,
Oryctolagus cuniculus ENSOCUG00000001606 ortholog_one2one 14 retrogenes
retro_ocun_1025, retro_ocun_1152, retro_ocun_1271, retro_ocun_1314, retro_ocun_1707, retro_ocun_1875, retro_ocun_1948, retro_ocun_434, retro_ocun_484, retro_ocun_577, retro_ocun_590, retro_ocun_764, retro_ocun_878, retro_ocun_998,
Otolemur garnettii ENSOGAG00000001309 ortholog_one2one 20 retrogenes
retro_ogar_1173, retro_ogar_1390, retro_ogar_2079, retro_ogar_2082, retro_ogar_2242, retro_ogar_2255, retro_ogar_2417, retro_ogar_2632, retro_ogar_2761, retro_ogar_297, retro_ogar_298, retro_ogar_3173, retro_ogar_3290, retro_ogar_3476, retro_ogar_432, retro_ogar_708, retro_ogar_754, retro_ogar_832, retro_ogar_909, retro_ogar_950,
Pelodiscus sinensis ENSPSIG00000003457 ortholog_one2one 1 retrogene
retro_psin_52,
Pteropus vampyrus ENSPVAG00000017201 ortholog_one2one 12 retrogenes
retro_pvam_1081, retro_pvam_1291, retro_pvam_164, retro_pvam_258, retro_pvam_260, retro_pvam_265, retro_pvam_271, retro_pvam_316, retro_pvam_553, retro_pvam_657, retro_pvam_818, retro_pvam_884,
Rattus norvegicus ENSRNOG00000016411 ortholog_one2one 5 retrogenes
retro_rnor_177, retro_rnor_186, retro_rnor_241, retro_rnor_295, retro_rnor_300,
Sorex araneus ENSSARG00000003170 possible_ortholog 2 retrogenes
retro_sara_356, retro_sara_8,
Sarcophilus harrisii ENSSHAG00000008905 possible_ortholog 6 retrogenes
retro_shar_187, retro_shar_226, retro_shar_475, retro_shar_492, retro_shar_621, retro_shar_671,
Tarsius syrichta ENSTSYG00000010097 possible_ortholog 24 retrogenes
retro_tsyr_1010, retro_tsyr_102, retro_tsyr_1123, retro_tsyr_1188, retro_tsyr_129, retro_tsyr_1313, retro_tsyr_1345, retro_tsyr_1398, retro_tsyr_1486, retro_tsyr_1668, retro_tsyr_1955, retro_tsyr_1993, retro_tsyr_205, retro_tsyr_249, retro_tsyr_303, retro_tsyr_419, retro_tsyr_453, retro_tsyr_556, retro_tsyr_645, retro_tsyr_733, retro_tsyr_764, retro_tsyr_801, retro_tsyr_970, retro_tsyr_99,
Vicugna pacos ENSVPAG00000011504 possible_ortholog 3 retrogenes
retro_vpac_133, retro_vpac_267, retro_vpac_339,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_480 64.04 63.64
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2. retro_ptro_503 86.02 69.70
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3. retro_ptro_618 97.73 100.00
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4. retro_ptro_854 87.97 100.00
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5. retro_ptro_1031 86.47 100.00
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6. retro_ptro_1203 92.48 99.24
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7. retro_ptro_1221 73.04 87.12
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8. retro_ptro_1222 73.04 87.12
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9. retro_ptro_1310 88.89 100.00
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10. retro_ptro_1330 66.93 94.70
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11. retro_ptro_1592 90.15 100.00
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12. retro_ptro_1604 83.70 100.00
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13. retro_ptro_1797 64.44 100.00
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14. retro_ptro_1839 73.49 62.12
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15. retro_ptro_1995 90.98 100.00
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16. retro_ptro_2077 79.10 100.00
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17. retro_ptro_2139 89.53 64.39
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18. retro_ptro_2197 55.13 56.82
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19. retro_ptro_2328 70.97 68.94
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20. retro_ptro_2350 71.11 100.00
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21. retro_ptro_2465 74.63 100.00
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22. retro_ptro_2495 90.98 100.00
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23. retro_ptro_2711 60.44 68.18
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24. retro_ptro_2807 67.44 64.39
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25. retro_ptro_2943 83.87 69.70
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Download FASTA sequences of all ENSPTRG00000018618 retrocopies