RetrogeneDB ID: | retro_ocun_778 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:126568953..126569264(-) | ||
Located in intron of: | ENSOCUG00000011677 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2AFV | ||
Ensembl ID: | ENSOCUG00000008133 | ||
Aliases: | None | ||
Description: | H2A histone family, member V (H2AFV), mRNA [Source:RefSeq mRNA;Acc:NM_001170941] |
Percent Identity: | 60.19 % |
Parental protein coverage: | 82.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAG-NASKDLKVK |
K.K.K....SQ.A..QF..G..H.HLK...T.H..VG.T.AVY.AA.L.YL.A.VLELAG..ASKDL... | |
Retrocopy | KKKKKKIFCSQTASMQFFMGCLHQHLKSGMTGHRHVGTTMAVYTAAVLVYLIARVLELAG<KASKDLQC- |
Parental | RITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSL |
.ITP.HLQ.AI.G...LDSLIK.TI..GG.IPHIHKSL | |
Retrocopy | -ITPLHLQFAI-GRDKLDSLIKVTITSGGIIPHIHKSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 19 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 30 .91 RPM |
SRP017611_liver | 0 .00 RPM | 8 .48 RPM |