RetrogeneDB ID: | retro_hsap_890 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:70125023..70125403(-) | ||
Located in intron of: | ENSG00000131626 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000255329 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2AFV | ||
Ensembl ID: | ENSG00000105968 | ||
Aliases: | H2AFV, H2A.Z-2, H2AV | ||
Description: | H2A histone family, member V [Source:HGNC Symbol;Acc:20664] |
Percent Identity: | 73.44 % |
Parental protein coverage: | 99.22 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAGGKAGKDSG-KAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLEL |
MAG.KAGKDS..K..........RA.LQF.VGRIH.HLK.RT.S.GRVGATAAV.S.AILEYLTAEVLEL | |
Retrocopy | MAGSKAGKDSR<KGQQRQLPTHKRANLQFLVGRIH*HLKSRTISPGRVGATAAVNSTAILEYLTAEVLEL |
Parental | AGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKT |
A.NASKD..VK..TP..LQLAIRGD.EL.SL.K.TIAG.GVIPHIHKSLIGKKGQQ.T | |
Retrocopy | ARNASKDFTVKHTTPHYLQLAIRGDKELGSLFKSTIAGKGVIPHIHKSLIGKKGQQQT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .04 RPM | 154 .41 RPM |
bodymap2_adrenal | 0 .16 RPM | 119 .99 RPM |
bodymap2_brain | 0 .02 RPM | 188 .76 RPM |
bodymap2_breast | 0 .02 RPM | 180 .16 RPM |
bodymap2_colon | 0 .00 RPM | 176 .58 RPM |
bodymap2_heart | 0 .02 RPM | 195 .26 RPM |
bodymap2_kidney | 0 .08 RPM | 126 .48 RPM |
bodymap2_liver | 0 .11 RPM | 68 .42 RPM |
bodymap2_lung | 0 .00 RPM | 140 .96 RPM |
bodymap2_lymph_node | 0 .04 RPM | 126 .91 RPM |
bodymap2_ovary | 0 .06 RPM | 193 .02 RPM |
bodymap2_prostate | 0 .00 RPM | 179 .73 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 146 .72 RPM |
bodymap2_testis | 0 .06 RPM | 129 .63 RPM |
bodymap2_thyroid | 0 .04 RPM | 186 .28 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 132 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_614 |
Gorilla gorilla | retro_ggor_720 |
Pongo abelii | retro_pabe_668 |
Macaca mulatta | retro_mmul_1049 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .06 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .06 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .09 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .02 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .04 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .06 RPM |