RetrogeneDB ID: retro_ogar_285

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873525.1:25959250..25960306(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000031226
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000013243
• Aliases: None
• Description: None

Sequence

>retro_ogar_285
ATGGCAATCGCACCCCTGAAAGTGTGCATCGTGGGCTCGGGGAACTGGGGTACAGTTATTGCAAAAATAATTGGCAATAA
TGTCAAGACACTTCAGAAGTTTGCCCCTACAGTCAAGATGTGGGTCTTTGAAGAAGTGGTTAATGGGAGAAAACTGACGG
ACATCATAAATAACGACCATGAAAATGTAAAATATCTTCCTGGACATAAGTTGCCAGAAAATGTAGTTGCCATCTCAAGT
CTCAGCGAGGCCGTGCAGGATGCAGGCGTGCTGGTGTTTGTCACTCCGCACCAGTACATCCACAAAGTCTGTGACGAGAT
CTCCGGGAGAGTGCCCAAGGAAGCACTGGGGATCACCCTCATCAAGGGTATAGACGAAGGTCCTGAGGGGCTGAAGCTCA
TTTCTGACATCATCCGGGAGAAGACAGGCATTGACATCAGCGTGCTGATGGGAGCCAACCACGCCTGCGAGGTGGCCGCA
GGCAAGTTCTGTGAGACCACAATCGGCAGCAAAGTCAGAGAGAACGGCCTTCTCTTCAAAGAGCTTCTGCAGACTCCAAG
TTTTCGAATTACTGTGGTGGAAGATTCAGACACTGTTGAACTCTGTGGTGCTCTTAAGAACATCGTGGCTATGGGAGCCG
GGTTCTGTGACGGCCTCCGCTATGGAGACAACACCAAAGCTGCTATCATCCGCCTGGGACTCATGGAAATGATTTCTTTC
GCCAGGATCTTCTGCAAGAACCAGGTGTCCACAGCTACCTTCCTAGAGAGCTGTGGGGTAGCTGACCTGATCACCACCTG
CTTCGGAGGGCGGAACCGCAGGGTGGCGGAGGCGTTTGTCAGAACCAACAAGACCCTTGAAGAACTGGAGGAGGAGATGC
TGAATGGGCAGAAGCTCCAAGGACCTCCGACTTCTGTCGAAGTGTACCGCATCCTCAAGCAGAAGGGACTGGTGGACAAG
TTTCCATTGTTCACTGTAATATATCAGATCTGCTATGAGGGCAAACCCGTTCAGGAGATGTTGCCTTGTCTCCAGAATCA
TCCAGAGCATATGTAA

Alignment

ORF - retro_ogar_285 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.46 %
• Parental protein coverage: 95.17 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GSAVAKIIGNNVKKLQKFAPTVKMWVFEETVNGRKLTDIINNDHENVKYLPGHKLPENVVAVPNLSEAVQ
          G...AKIIGNNVK.LQKFAPTVKMWVFEE.VNGRKLTDIINNDHENVKYLPGHKLPENVVA...LSEAVQ
Retrocopy GTVIAKIIGNNVKTLQKFAPTVKMWVFEEVVNGRKLTDIINNDHENVKYLPGHKLPENVVAISSLSEAVQ

Parental  DADLLVFVIPHQFIHRICDEITGRVPKEALGITLIKGIDEGPEGLKLISDIIREKMGIDISVLMGANIAN
          DA..LVFV.PHQ.IH..CDEI.GRVPKEALGITLIKGIDEGPEGLKLISDIIREK.GIDISVLMGAN.A.
Retrocopy DAGVLVFVTPHQYIHKVCDEISGRVPKEALGITLIKGIDEGPEGLKLISDIIREKTGIDISVLMGANHAC

Parental  EVAAEKFCETTIGSKVIENGLLFKELLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLHCGDNTK
          EVAA.KFCETTIGSKV.ENGLLFKELLQTP.FRITVV.D.DTVELCGALKNIVA.GAGFCDGL..GDNTK
Retrocopy EVAAGKFCETTIGSKVRENGLLFKELLQTPSFRITVVEDSDTVELCGALKNIVAMGAGFCDGLRYGDNTK

Parental  AAVIRLGLMEMISFARIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNG
          AA.IRLGLMEMISFARIFCK.QVSTATFLESCGVADLITTC.GGRNRRVAEAF.RT.KT.EELE.EMLNG
Retrocopy AAIIRLGLMEMISFARIFCKNQVSTATFLESCGVADLITTCFGGRNRRVAEAFVRTNKTLEELEEEMLNG

Parental  QKLQGPQTSAEVYRILKQKGLMDKFPLFTAVYQICYEGRPVQEMLSCLQCHPEHI
          QKLQGP.TS.EVYRILKQKGL.DKFPLFT..YQICYEG.PVQEML.CLQ.HPEH.
Retrocopy QKLQGPPTSVEVYRILKQKGLVDKFPLFTVIYQICYEGKPVQEMLPCLQNHPEHM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_285 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000009826	1 retrocopy	retro_btau_1671,
Choloepus hoffmanni	ENSCHOG00000012633	5 retrocopies	retro_chof_1033, retro_chof_306, retro_chof_340, retro_chof_620, retro_chof_724,
Loxodonta africana	ENSLAFG00000013996	1 retrocopy	retro_lafr_101,
Microcebus murinus	ENSMICG00000011060	1 retrocopy	retro_mmur_1205,
Mus musculus	ENSMUSG00000050627	3 retrocopies	retro_mmus_1348, retro_mmus_2552, retro_mmus_3695,
Oryctolagus cuniculus	ENSOCUG00000010093	2 retrocopies	retro_ocun_1529, retro_ocun_1588,
Otolemur garnettii	ENSOGAG00000013243	1 retrocopy	retro_ogar_285 ,
Procavia capensis	ENSPCAG00000016132	1 retrocopy	retro_pcap_316,
Rattus norvegicus	ENSRNOG00000026455	2 retrocopies	retro_rnor_2035, retro_rnor_2474,
Sus scrofa	ENSSSCG00000021977	1 retrocopy	retro_sscr_154,