RetrogeneDB ID: | retro_ogar_3329 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873780.1:604096..604841(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSOGAG00000016254 | ||
Aliases: | None | ||
Description: | ribosomal protein S6 [Source:HGNC Symbol;Acc:10429] |
Percent Identity: | 76.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MKLNISFPA-TGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKG-YVVRISGGNDKQGFPMKQGVL |
MKLNISFPA.TG..KLI.VD.E.KLRTF.EKR.ATEVA.D.LGEEWKG..VV.ISGGNDKQ.FP.K.GVL | |
Retrocopy | MKLNISFPA>TGFWKLIDVDYECKLRTFCEKRTATEVATDTLGEEWKGGHVV*ISGGNDKQVFPRKWGVL |
Parental | THGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRA |
THGRV.LLLSKGHSCYRPRRTGERK..SV.G.......S.L.......GEKD.PGLTDTTV...LGPK.A | |
Retrocopy | THGRVCLLLSKGHSCYRPRRTGERKCISVQGWMPI*VFSTL--LLXXXGEKDVPGLTDTTVLQHLGPKQA |
Parental | SRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAE |
SRI.KLF.LSKEDDVRQYV.RK.LN.EG.KPRTKAP.IQRLVTPRV.QHKR..IALKKQRTKKNKEEAA. | |
Retrocopy | SRICKLFSLSKEDDVRQYVIRKLLN*EGEKPRTKAPEIQRLVTPRVMQHKRWHIALKKQRTKKNKEEAAK |
Parental | YAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK |
.AK.L.KRMKEAKE..QEQ.AKRR.LSSLRASTSKSESSQK | |
Retrocopy | HAKFLSKRMKEAKEECQEQFAKRRSLSSLRASTSKSESSQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |