Parental gene:

RPS6, ENSSHAG00000005486

Aliases:None
Description:ribosomal protein S6 [Source:HGNC Symbol;Acc:10429]
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL841471.1:161948..169103(-)


>ENSSHAG00000005486
ATGAAGCTCAACATCTCTTTCCCAGCCACTGGCTGTCAGAAACTCATTGAAGTCGATGATGAAAGAAAGCTACGGACCTT
TTATGAGAAGCGTATGGCCACTGAAGTTTCTGCTGATGCTCTGGGTGAAGAATGGAAGGGTTATGTGGTCCGCATCAGTG
GTGGGAATGACAAACAAGGATTCCCCATGAAGCAGGGTGTTTTGGCTCATGGACGGGTCCGCCTGCTGCTCAGTAAGGGC
CATTCTTGCTATCGTCCTAGAAGAACTGGAGAAAGAAAACGTAAATCTGTTAGGGGCTGTATTGTGGATGCAAATCTGAG
TGTCCTCAATTTGGTTATCGTGAAGAAAGGTGAGAAAGATATACCAGGACTGACAGATACAACTGTGCCTCGGCGCCTGG
GGCCCAAAAGAGCTAGCAGAATCCGCAAACTTTTCAATTTGTCCAAAGAAGATGATGTCCGGCAGTATGTTGTGAGAAAG
CCTCTCAACAAGGAAGGTAAGAAACCAAGGACTAAGGCTCCTAAAATTCAGCGTCTGGTGACTCCCCGTGTTTTGCAGCA
CAAACGTAGACGCATTGCTTTGAAGAAGCAACGTACCCAGAAGAATAAGGAAGAAGCAGCTGAATATGCCAAGCTTTTGG
CCAAGAGAATGAAGGAGGCTAAAGAAAAACGACAGGAACAGATCGCTAAGAGACGTCGACTGTCTTCCCTGAGAGCCTCC
ACCTCAAAGTCTGAGTCCAGTCAAAAATAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017634 ortholog_one2many 1 retrogene
retro_acar_20,
Ailuropoda melanoleuca ENSAMEG00000002925 possible_ortholog 14 retrogenes
retro_amel_1040, retro_amel_1250, retro_amel_1384, retro_amel_1526, retro_amel_1646, retro_amel_1676, retro_amel_189, retro_amel_312, retro_amel_334, retro_amel_382, retro_amel_510, retro_amel_568, retro_amel_657, retro_amel_841,
Canis familiaris ENSCAFG00000001615 possible_ortholog 4 retrogenes
retro_cfam_184, retro_cfam_1936, retro_cfam_48, retro_cfam_87,
Callithrix jacchus ENSCJAG00000020612 possible_ortholog 6 retrogenes
retro_cjac_1246, retro_cjac_18, retro_cjac_180, retro_cjac_190, retro_cjac_2982, retro_cjac_59,
Cavia porcellus ENSCPOG00000003750 possible_ortholog 4 retrogenes
retro_cpor_1244, retro_cpor_22, retro_cpor_317, retro_cpor_486,
Echinops telfairi ENSETEG00000001584 possible_ortholog 18 retrogenes
retro_etel_1143, retro_etel_1281, retro_etel_1410, retro_etel_1430, retro_etel_1575, retro_etel_167, retro_etel_1822, retro_etel_188, retro_etel_1964, retro_etel_2004, retro_etel_2041, retro_etel_2194, retro_etel_263, retro_etel_337, retro_etel_378, retro_etel_541, retro_etel_809, retro_etel_825,
Felis catus ENSFCAG00000002541 possible_ortholog 26 retrogenes
retro_fcat_1082, retro_fcat_1108, retro_fcat_1154, retro_fcat_1262, retro_fcat_1373, retro_fcat_1642, retro_fcat_1679, retro_fcat_1760, retro_fcat_1791, retro_fcat_1934, retro_fcat_1937, retro_fcat_1963, retro_fcat_198, retro_fcat_238, retro_fcat_328, retro_fcat_358, retro_fcat_380, retro_fcat_392, retro_fcat_493, retro_fcat_659, retro_fcat_738, retro_fcat_750, retro_fcat_850, retro_fcat_894, retro_fcat_912, retro_fcat_968,
Gorilla gorilla ENSGGOG00000002652 possible_ortholog 13 retrogenes
retro_ggor_1430, retro_ggor_1703, retro_ggor_2097, retro_ggor_2358, retro_ggor_2439, retro_ggor_2769, retro_ggor_2863, retro_ggor_2864, retro_ggor_616, retro_ggor_670, retro_ggor_777, retro_ggor_896, retro_ggor_965,
Loxodonta africana ENSLAFG00000010766 possible_ortholog 4 retrogenes
retro_lafr_1021, retro_lafr_1239, retro_lafr_59, retro_lafr_667,
Myotis lucifugus ENSMLUG00000007588 possible_ortholog 27 retrogenes
retro_mluc_1041, retro_mluc_1146, retro_mluc_1169, retro_mluc_1393, retro_mluc_1411, retro_mluc_1448, retro_mluc_1472, retro_mluc_1532, retro_mluc_1566, retro_mluc_1593, retro_mluc_1629, retro_mluc_1635, retro_mluc_1723, retro_mluc_1799, retro_mluc_1909, retro_mluc_1928, retro_mluc_1933, retro_mluc_2110, retro_mluc_2129, retro_mluc_490, retro_mluc_493, retro_mluc_514, retro_mluc_557, retro_mluc_652, retro_mluc_678, retro_mluc_722, retro_mluc_830,
Macaca mulatta ENSMMUG00000003412 possible_ortholog 1 retrogene
retro_mmul_263,
Monodelphis domestica ENSMODG00000004095 ortholog_one2one 1 retrogene
retro_mdom_301,
Nomascus leucogenys ENSNLEG00000017532 possible_ortholog 14 retrogenes
retro_nleu_1033, retro_nleu_1333, retro_nleu_1613, retro_nleu_226, retro_nleu_2471, retro_nleu_252, retro_nleu_2536, retro_nleu_2611, retro_nleu_2652, retro_nleu_2655, retro_nleu_2860, retro_nleu_313, retro_nleu_476, retro_nleu_546,
Otolemur garnettii ENSOGAG00000016254 possible_ortholog 21 retrogenes
retro_ogar_1208, retro_ogar_1222, retro_ogar_1335, retro_ogar_1356, retro_ogar_1359, retro_ogar_1439, retro_ogar_1526, retro_ogar_1531, retro_ogar_1612, retro_ogar_1979, retro_ogar_2174, retro_ogar_2195, retro_ogar_2248, retro_ogar_2264, retro_ogar_2514, retro_ogar_2707, retro_ogar_2853, retro_ogar_3329, retro_ogar_462, retro_ogar_575, retro_ogar_782,
Ochotona princeps ENSOPRG00000000751 possible_ortholog 6 retrogenes
retro_opri_1111, retro_opri_1187, retro_opri_248, retro_opri_33, retro_opri_466, retro_opri_865,
Ochotona princeps ENSOPRG00000012290 possible_ortholog 5 retrogenes
retro_opri_123, retro_opri_642, retro_opri_78, retro_opri_862, retro_opri_895,
Pongo abelii ENSPPYG00000019193 possible_ortholog 15 retrogenes
retro_pabe_1024, retro_pabe_1625, retro_pabe_2065, retro_pabe_2616, retro_pabe_2617, retro_pabe_2882, retro_pabe_2964, retro_pabe_3282, retro_pabe_3481, retro_pabe_3777, retro_pabe_629, retro_pabe_730, retro_pabe_822, retro_pabe_850, retro_pabe_955,
Rattus norvegicus ENSRNOG00000007663 possible_ortholog 21 retrogenes
retro_rnor_1092, retro_rnor_1093, retro_rnor_1269, retro_rnor_1484, retro_rnor_1556, retro_rnor_1564, retro_rnor_1845, retro_rnor_1901, retro_rnor_1991, retro_rnor_2071, retro_rnor_2073, retro_rnor_2187, retro_rnor_2332, retro_rnor_2447, retro_rnor_2781, retro_rnor_2790, retro_rnor_558, retro_rnor_756, retro_rnor_896, retro_rnor_942, retro_rnor_943,
Rattus norvegicus ENSRNOG00000049025 possible_ortholog 8 retrogenes
retro_rnor_1008, retro_rnor_1189, retro_rnor_1988, retro_rnor_1990, retro_rnor_2085, retro_rnor_2635, retro_rnor_479, retro_rnor_718,
Sus scrofa ENSSSCG00000005169 possible_ortholog 6 retrogenes
retro_sscr_187, retro_sscr_425, retro_sscr_645, retro_sscr_856, retro_sscr_940, retro_sscr_983,
Tupaia belangeri ENSTBEG00000003474 possible_ortholog 33 retrogenes
retro_tbel_1380, retro_tbel_1384, retro_tbel_1729, retro_tbel_1747, retro_tbel_1899, retro_tbel_1907, retro_tbel_2051, retro_tbel_2444, retro_tbel_2621, retro_tbel_2753, retro_tbel_2848, retro_tbel_3148, retro_tbel_316, retro_tbel_3165, retro_tbel_3271, retro_tbel_3497, retro_tbel_3591, retro_tbel_3747, retro_tbel_3792, retro_tbel_3866, retro_tbel_3883, retro_tbel_411, retro_tbel_4208, retro_tbel_4242, retro_tbel_4413, retro_tbel_4467, retro_tbel_4570, retro_tbel_485, retro_tbel_492, retro_tbel_576, retro_tbel_743, retro_tbel_824, retro_tbel_828,
Tarsius syrichta ENSTSYG00000008569 possible_ortholog 8 retrogenes
retro_tsyr_1048, retro_tsyr_116, retro_tsyr_1521, retro_tsyr_2090, retro_tsyr_347, retro_tsyr_535, retro_tsyr_757, retro_tsyr_87,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_shar_549 71.26 100.00
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Download FASTA sequences of all ENSSHAG00000005486 retrocopies