RetrogeneDB ID: | retro_opri_173 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_321:42519..42931(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COQ10B | ||
Ensembl ID: | ENSOPRG00000010091 | ||
Aliases: | None | ||
Description: | coenzyme Q10 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:25819] |
Percent Identity: | 63.57 % |
Parental protein coverage: | 56.61 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | KHFVPWCK-KSDVISRRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGRLFNHLETSWRFSPG |
K..V..CK.KSD.I..RS.Y.K...E.GFPPVLE.Y.SVVT..K.HLV.ASCT....FNHLE.S..F.PG | |
Retrocopy | KFLVSLCK<KSDIIAKRSVYVKHD*ELGFPPVLEHYSSVVTSGKSHLVRASCTIAKFFNHLEAS*HFIPG |
Parental | LPGYPRT-CTLDFSISFEFRSLLHSQLATLFFDEVVKQ-MVAAFERRACKLYGPETNIPRELMLHEVHHT |
.PGYP.T.CTL.FSISF.F.S.LHSQLA.L..DEVVKQ..VA.F.R.A.KLYGPE.NIP.EL...E.H.T | |
Retrocopy | IPGYPNT>CTLGFSISFKFLSCLHSQLAALCSDEVVKQ>TVASFDRKADKLYGPEENIPQELIFPEAHQT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004659 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005807 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003971 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000003229 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000004090 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000001626 | 1 retrocopy | |
Felis catus | ENSFCAG00000022385 | 1 retrocopy | |
Homo sapiens | ENSG00000115520 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000023373 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000000865 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010488 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000012281 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025981 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006871 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000010091 | 3 retrocopies |
retro_opri_1020, retro_opri_173 , retro_opri_664,
|
Pongo abelii | ENSPPYG00000013045 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012772 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000014456 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012642 | 2 retrocopies |