RetrogeneDB ID: | retro_pabe_408 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:85575338..85575791(-) | ||
Located in intron of: | ENSPPYG00000000568 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSPPYG00000003456 | ||
Aliases: | None | ||
Description: | ribosomal protein S13 [Source:HGNC Symbol;Acc:10386] |
Percent Identity: | 88.74 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK |
MG.MH..GKGLSQSAL.YRRSVPTWLKLTSDD.KEQI.KLAKKGLTPSQIG.ILRDSHG.AQVRFVTGNK | |
Retrocopy | MGHMHTSGKGLSQSALLYRRSVPTWLKLTSDDMKEQI*KLAKKGLTPSQIGGILRDSHGAAQVRFVTGNK |
Parental | ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWK |
ILRILKSKGLAP.LPEDLYHLIK.AVAV.K.LER.RKDKDAKFRLILIESRIH.LARYYKTK.VL.PNWK | |
Retrocopy | ILRILKSKGLAPNLPEDLYHLIKAAVAVQKLLERKRKDKDAKFRLILIESRIHCLARYYKTK*VLSPNWK |
Parental | YESSTASALVA |
YES.TASALVA | |
Retrocopy | YESYTASALVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 55 .79 RPM |
SRP007412_cerebellum | 0 .00 RPM | 116 .62 RPM |
SRP007412_heart | 0 .06 RPM | 114 .36 RPM |
SRP007412_kidney | 0 .03 RPM | 124 .83 RPM |
SRP007412_liver | 0 .06 RPM | 128 .71 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_251 |
Gorilla gorilla | retro_ggor_303 |