RetrogeneDB ID: | retro_mmus_807 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 11:61205722..61206175(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082626 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps13 | ||
Ensembl ID: | ENSMUSG00000090862 | ||
Aliases: | Rps13, 2700063M04Rik | ||
Description: | ribosomal protein S13 [Source:MGI Symbol;Acc:MGI:1915302] |
Percent Identity: | 95.36 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK |
MG.MHAPGKGLSQSALPYR.SVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK | |
Retrocopy | MGHMHAPGKGLSQSALPYRHSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK |
Parental | ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWK |
ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKF.LI.IE.RIHRLA.Y.KTKRVLPPNWK | |
Retrocopy | ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFCLIPIETRIHRLA*YFKTKRVLPPNWK |
Parental | YESSTASALVA |
YESSTASALVA | |
Retrocopy | YESSTASALVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .17 RPM |
SRP007412_cerebellum | 0 .00 RPM | 19 .84 RPM |
SRP007412_heart | 0 .00 RPM | 43 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 34 .61 RPM |
SRP007412_liver | 0 .00 RPM | 31 .90 RPM |
SRP007412_testis | 0 .05 RPM | 43 .50 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_14622 | 320 libraries | 494 libraries | 251 libraries | 4 libraries | 3 libraries |