RetrogeneDB ID: | retro_mmus_328 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:63038231..63038489(+) | ||
Located in intron of: | ENSMUSG00000040865 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081617 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps13 | ||
Ensembl ID: | ENSMUSG00000090862 | ||
Aliases: | Rps13, 2700063M04Rik | ||
Description: | ribosomal protein S13 [Source:MGI Symbol;Acc:MGI:1915302] |
Percent Identity: | 73.03 % |
Parental protein coverage: | 57.62 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | DVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRI-LKSKGLAPDLPEDLYHLIKKAVAVRK |
.VKEQIYKLAKKGL.PS.I.VILRDS..V.QVRFVT.NKILRI.L..K.L.P......YHLIKK.VAV.K | |
Retrocopy | NVKEQIYKLAKKGLSPSHIVVILRDSYSVVQVRFVTVNKILRI>LSPKAL-PLISLWTYHLIKKTVAVWK |
Parental | HLE-RNRKDKDAKFRLILI |
HLE..NRKDKDAKF.LILI | |
Retrocopy | HLE<GNRKDKDAKFCLILI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .17 RPM |
SRP007412_cerebellum | 0 .00 RPM | 19 .84 RPM |
SRP007412_heart | 0 .00 RPM | 43 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 34 .61 RPM |
SRP007412_liver | 0 .00 RPM | 31 .90 RPM |
SRP007412_testis | 0 .00 RPM | 43 .50 RPM |