RetrogeneDB ID: | retro_pabe_607 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 10:70850764..70851775(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000002406 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ANXA2 | ||
Ensembl ID: | ENSPPYG00000006526 | ||
Aliases: | None | ||
Description: | Annexin A2 [Source:UniProtKB/Swiss-Prot;Acc:Q5R5A0] |
Percent Identity: | 86.22 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSTVHEILCKLSLEGDHSTPPSAYGSVKAYTNFDAERDALNIETAIKTKGVDEVTIVNILTNRSNAQRQD |
M.T...ILCKLSLEGDHSTP.SAYGSVKAYTNFDAE.DALNIE..I.TKG..E.TIVNILTN..NA.RQD | |
Retrocopy | MYTIYKILCKLSLEGDHSTPSSAYGSVKAYTNFDAEGDALNIERTIRTKGMGEFTIVNILTNSRNARRQD |
Parental | IAFAYQRRTKKELASALKSALS-GHLETVILGLLKTPAQYDASELKASMKGLGTDEDSLIEIICSRTNQE |
IAFA.QRRTKKELASALKSAL..GHLETVILGLLKTPAQYDASELKASMKGLGT.EDSLIEIICS.TNQE | |
Retrocopy | IAFA*QRRTKKELASALKSALL<GHLETVILGLLKTPAQYDASELKASMKGLGTEEDSLIEIICSTTNQE |
Parental | LQEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDYELIDQDARDLYDAGVKRKGTD |
LQEINRVYKEMYK.DLEKDIISDT.GDFRKLM.ALAK.RR.EDGSVIDYELIDQDA.D.YDAGVKRK.TD | |
Retrocopy | LQEINRVYKEMYKVDLEKDIISDTYGDFRKLMFALAKVRRPEDGSVIDYELIDQDAQDFYDAGVKRKRTD |
Parental | VPKWISIMTERSVPHLQKVFDRYKSYSPYDMLESIRKEVKGDLENAFLNLVQCIQNKPLYFADRLYDSMK |
VPKWISIMTE.S..HLQKVFDRYKSYSP....ESI.K.VKGDLENAFLNLVQCIQNKPLYFA..LY.SMK | |
Retrocopy | VPKWISIMTEQSMSHLQKVFDRYKSYSP--SRESIKKKVKGDLENAFLNLVQCIQNKPLYFANWLYYSMK |
Parental | GKGTRDKVLIRIMVSRSEVDMLKIRSEFKRKYGKSLYYYIQQDTKGDY-QKALLYLCGGDD |
GKGTRDKVLIRI..S.SEVDMLKIRSEFKRKYG.S.YYYIQQDTK.DY.QKALLYLCGGDD | |
Retrocopy | GKGTRDKVLIRIIISCSEVDMLKIRSEFKRKYGMSPYYYIQQDTKSDY>QKALLYLCGGDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 22 .61 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .76 RPM |
SRP007412_heart | 0 .03 RPM | 75 .11 RPM |
SRP007412_kidney | 0 .00 RPM | 89 .83 RPM |
SRP007412_liver | 0 .03 RPM | 74 .85 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_580 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000016686 | 3 retrocopies | |
Homo sapiens | ENSG00000182718 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000009738 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000008980 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002464 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000011604 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000762 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011678 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000006526 | 2 retrocopies |
retro_pabe_2572, retro_pabe_607 ,
|
Pan troglodytes | ENSPTRG00000007132 | 2 retrocopies |