RetrogeneDB ID: | retro_pabe_779 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:79517045..79518032(-) | ||
Located in intron of: | ENSPPYG00000003737 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHAL6A | ||
Ensembl ID: | ENSPPYG00000003435 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A-like 6A [Source:HGNC Symbol;Acc:28335] |
Percent Identity: | 64.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 7 |
Parental | MATVKSELIKNFAEEEAIHHNKISIVGTGSVGVACAISILLKGLSDELVLVDVDEGK-LKG-ETMDLQHG |
M.T...E.I.NFA.E..IHH.K.SI..TGSV..A.AI...LK.L.DE...V.VD.G....G.ETMDL.HG | |
Retrocopy | MVTIQNEFIENFASEVVIHHSKVSIIRTGSVSTASAITMFLKDLRDEVAFVAVDNGE<IEGCETMDLKHG |
Parental | SPFMKMPNIVSSKDYLVTANSNLVIITAGARQ-KKGETRLDLVQRNVSIFKLMIPNITQYSPH-CKLLIV |
..F.K.PN..SSKDYL..ANSNLVIIT..A.Q.KK......LV..NV.I.KLM..NITQYSP..CKL.IV | |
Retrocopy | NLFLKLPNSASSKDYLISANSNLVIITSSACQ>KKVK-HFNLVSLNVAIIKLMMSNITQYSPA<CKL-IV |
Parental | TNPVDILTYVAWKLSAFPKNRVIGSGCNLDSARFRYFIGQRLGIHSESCHGLILGEHGDSSVPVWSGVNI |
..PVDIL.YVA.KLS.F.K...IG.GCNLD.A.F.....Q.LGIHS.SCHGLI.GEHGDSSVP.WSGVNI | |
Retrocopy | SSPVDILIYVA*KLSTFFKTHIIGNGCNLDTAHFHFLTVQMLGIHSGSCHGLIFGEHGDSSVPMWSGVNI |
Parental | AGVPLKDLNPDIGTDKDPEQ-WENVHKKVISSGYEMVKMKGYTSWGISLSVADLTESILKNLRRVHPVST |
AGVPLKDLN.D.G.D.D.EQ..ENVHK.VI.S.YE..KMK.YTSW.I..SV.D.TESIL.N.RRVH.VST | |
Retrocopy | AGVPLKDLNSDKGIDQDLEQ>GENVHKEVIASAYEIMKMKDYTSWAIGPSVTD*TESILENPRRVHSVST |
Parental | -LSKGLYGINEEIFLSVPCI-LGENGITDLIKVKLTFEEEACLQKSAETLWE-IQKELKL |
...KGLYG.N.E.FLSVPCI.L.ENG..DL..VKLT.E..A.L..S.ETLWE.IQK.LKL | |
Retrocopy | <IIKGLYGMN-EVFLSVPCI<LRENGLADLT*VKLTLEDAAHL*RSTETLWE<IQKKLKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 0 .44 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .34 RPM |
SRP007412_heart | 0 .06 RPM | 0 .12 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .30 RPM |
SRP007412_liver | 0 .06 RPM | 0 .28 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_905 |
Macaca mulatta | retro_mmul_1111 |
Equus caballus | retro_ecab_933 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007067 | 2 retrocopies | |
Homo sapiens | ENSG00000166800 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000014614 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017780 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000009261 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003435 | 2 retrocopies |
retro_pabe_203, retro_pabe_779 ,
|
Pongo abelii | ENSPPYG00000003437 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000004356 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000003423 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008062 | 4 retrocopies |