Parental gene: | LDHAL6A, ENSCJAG00000007067 |
| Aliases: | None |
| Description: | lactate dehydrogenase A-like 6A [Source:HGNC Symbol;Acc:28335] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 11:81986907..82054673(+) |
>ENSCJAG00000007067
ATGAGCTGGGCTGCAAGTGTTCTGCGGAGCAGCCAGAGAGCGGGCGCTGCGGGAGCGGATTGTTTTTGCACAAGGATGGC
TCCGTGTCTCCGCCAGGCGGTATGTGACCTGCTCGGGTCCGCTTCATGGAGGCTGAGCTGCCTGGTTTCCAGGATGGCAA
CTGTCAAGGGTGAACTTATTAAGAATGTCGCTGAGGAGAAGGCCATTCATCACAATAAGATCTCCATTGTAGGAAGTGGA
TCGGTTGGTGTGGCTTGTGCTATCAGCATCTTATTAAAAGGTTTGAGTGATGAGCTCGTCCTTGTGGATGATGATGAAGG
CAAACTGAAGGGTGAGACAATGGATCTTCAACACGGCGGCCCCTTTGTAAAAATGCCGAAAATTGTCTCCAGCAAAGATT
ACCTGGTCACTGCAAACTCCAATCTAGTAATTATCACGGCAGGTGCACGCCAGAAAAAAGGAGAAACACGCCTTGATTTA
GTCCAGCGAAATGTGTCCATCTTTAAATTAATAATTCCCAGTATTACCCAGTACAGTCCTCACTGCAAACTGCTTATTGT
TACTAATCCAGTGGATATTTTAACTTACGTGGCCTGGAAATTGAGTGCATTTCCCAAAAACCGTGTTATTGGAAGTGGCT
GTAATCTGGACTCCGCTCGTTTTCGTTACTTTATTGGGCAAAGGCTTGGCATCCACTCTGAAAGCTGTCATGGGCTGGTC
CTTGGAGAGCATGGTAACTCAAGTGTCCCTGTGTGGAGTGGTGTGAACATTGCTGGTGTCCCTCTGAAGGATCTGAACCC
AGATATAGGAACTTATAAAGATCCTGAGCAGTGGGAAAATGTCCATAAAAAAGTGGTTTCCAGCTACAGTGGCTATGAGA
TGCTCAAAATGAAAGGTTATACTTCTTGGGGCATTAGCCTATCTGTAGCTGATTTAACAGAAAGTATCTTGAAGAATCTT
AGGAGAGTGCATCCAGTTTCTACCCTAAGTAAGGGCCTCTATGGAATAAATGAAGAAATATTCCTTAGTGTCCCATGTAT
CCTGGGAGAGAATGGTATCGCAGACCTTATAAAAGTAAAACTGACCCTTGAAGAGGAGGCCTGCTTGCAAAAGAGTGCAG
AAATACTTTGGGAAATTCAGAAGGAGCTCAAGCTTTAA
ATGAGCTGGGCTGCAAGTGTTCTGCGGAGCAGCCAGAGAGCGGGCGCTGCGGGAGCGGATTGTTTTTGCACAAGGATGGC
TCCGTGTCTCCGCCAGGCGGTATGTGACCTGCTCGGGTCCGCTTCATGGAGGCTGAGCTGCCTGGTTTCCAGGATGGCAA
CTGTCAAGGGTGAACTTATTAAGAATGTCGCTGAGGAGAAGGCCATTCATCACAATAAGATCTCCATTGTAGGAAGTGGA
TCGGTTGGTGTGGCTTGTGCTATCAGCATCTTATTAAAAGGTTTGAGTGATGAGCTCGTCCTTGTGGATGATGATGAAGG
CAAACTGAAGGGTGAGACAATGGATCTTCAACACGGCGGCCCCTTTGTAAAAATGCCGAAAATTGTCTCCAGCAAAGATT
ACCTGGTCACTGCAAACTCCAATCTAGTAATTATCACGGCAGGTGCACGCCAGAAAAAAGGAGAAACACGCCTTGATTTA
GTCCAGCGAAATGTGTCCATCTTTAAATTAATAATTCCCAGTATTACCCAGTACAGTCCTCACTGCAAACTGCTTATTGT
TACTAATCCAGTGGATATTTTAACTTACGTGGCCTGGAAATTGAGTGCATTTCCCAAAAACCGTGTTATTGGAAGTGGCT
GTAATCTGGACTCCGCTCGTTTTCGTTACTTTATTGGGCAAAGGCTTGGCATCCACTCTGAAAGCTGTCATGGGCTGGTC
CTTGGAGAGCATGGTAACTCAAGTGTCCCTGTGTGGAGTGGTGTGAACATTGCTGGTGTCCCTCTGAAGGATCTGAACCC
AGATATAGGAACTTATAAAGATCCTGAGCAGTGGGAAAATGTCCATAAAAAAGTGGTTTCCAGCTACAGTGGCTATGAGA
TGCTCAAAATGAAAGGTTATACTTCTTGGGGCATTAGCCTATCTGTAGCTGATTTAACAGAAAGTATCTTGAAGAATCTT
AGGAGAGTGCATCCAGTTTCTACCCTAAGTAAGGGCCTCTATGGAATAAATGAAGAAATATTCCTTAGTGTCCCATGTAT
CCTGGGAGAGAATGGTATCGCAGACCTTATAAAAGTAAAACTGACCCTTGAAGAGGAGGCCTGCTTGCAAAAGAGTGCAG
AAATACTTTGGGAAATTCAGAAGGAGCTCAAGCTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 1 .03 RPM |
| SRP051959_skeletal_muscle | 0 .57 RPM |
| SRP051959_lymph_node | 1 .07 RPM |
| SRP051959_lung | 1 .29 RPM |
| SRP051959_liver | 0 .95 RPM |
| SRP051959_kidney | 0 .58 RPM |
| SRP051959_heart | 0 .70 RPM |
| SRP051959_colon | 0 .95 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000007094 | within_species_paralog | 1 retrogene | |
| Homo sapiens | ENSG00000166800 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000014614 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000017780 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009261 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000003435 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000003423 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000008062 | possible_ortholog | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_164 | 78.61 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2180 | 62.27 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000007067 retrocopies