RetrogeneDB ID: | retro_pabe_3780 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:73748577..73749420(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSPPYG00000004356 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541] |
Percent Identity: | 85.87 % |
Parental protein coverage: | 83.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQ-RNVNVFKFIIP |
LEDKLKGEMMDLQHGSLFLQT.KIV.DKDYSVTA..KIVVVTAG..QQE.E.RLNLVQ..NVNVFKFII. | |
Retrocopy | LEDKLKGEMMDLQHGSLFLQTLKIVPDKDYSVTASYKIVVVTAGALQQERERRLNLVQ>KNVNVFKFIIL |
Parental | QIVKYSPDCI-IIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILG |
QIVKY..DC..IIVVSN..DILTYVTWK.SGLPKH.VIGSGCN..SARF..L.AEK.GIHPSSCHG.ILG | |
Retrocopy | QIVKYTSDCT<IIVVSN*GDILTYVTWKISGLPKHYVIGSGCNPGSARFHCLTAEKFGIHPSSCHGRILG |
Parental | EHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIE |
EH.DSSVAVW.G.N.AG.SLQELNPE.GTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIE | |
Retrocopy | EHSDSSVAVWIGMNMAGFSLQELNPEIGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIE |
Parental | SMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQKLKDDE-VAQLKKSADTLWDIQKDL |
S.LKNLSRIHPV.TMVK.MYGIENEVFLSLPCILNARGLTSVINQKLKDD..VAQ.KKS.DT.WDIQKDL | |
Retrocopy | SVLKNLSRIHPVLTMVKRMYGIENEVFLSLPCILNARGLTSVINQKLKDDDGVAQFKKSTDTPWDIQKDL |
Parental | KDL |
KDL | |
Retrocopy | KDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .50 RPM | 504 .36 RPM |
SRP007412_cerebellum | 0 .24 RPM | 372 .22 RPM |
SRP007412_heart | 0 .54 RPM | 1192 .91 RPM |
SRP007412_kidney | 0 .40 RPM | 860 .49 RPM |
SRP007412_liver | 0 .06 RPM | 33 .91 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4863 |
Pan troglodytes | retro_ptro_3237 |
Gorilla gorilla | retro_ggor_3033 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016175 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000012195 | 9 retrocopies | |
Echinops telfairi | ENSETEG00000019955 | 1 retrocopy | |
Felis catus | ENSFCAG00000012639 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004825 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012155 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002679 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000017786 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000172 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000003435 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000003437 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000004356 | 3 retrocopies |
retro_pabe_1738, retro_pabe_1744, retro_pabe_3780 ,
|
Sus scrofa | ENSSSCG00000000576 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013759 | 7 retrocopies |