RetrogeneDB ID: | retro_pcap_34 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_1532:13311..13583(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPC | ||
Ensembl ID: | ENSPCAG00000016885 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157] |
Percent Identity: | 54.26 % |
Parental protein coverage: | 52. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | FSAPPPAGAMIPP-PPSLPGPPRPGMMPAPHMGGPPMM-PMMGPPPPG-MMPVGPAPGMRPPMGGHMPMM |
FSA.PPA..M.P....SL.GP..P....APH.G..PM..P.MGP.PPG..MPVGPAPG.RPPMGG..... | |
Retrocopy | FSASPPARVMVPA>SVSLLGPSHPSTILAPHVGELPMT<PLMGPFPPG<VMPVGPAPGIRPPMGGYISIT |
Parental | PGPPMMRPPARPMMVPTRPGMTRP |
PGPP..R.....M.V....GMT.P | |
Retrocopy | PGPPVTRHSSCLMKVLAQLGMT*P |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |