RetrogeneDB ID: | retro_fcat_1814 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:44382471..44382799(+) | ||
Located in intron of: | ENSFCAG00000022780 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPC | ||
Ensembl ID: | ENSFCAG00000005876 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157] |
Percent Identity: | 59.29 % |
Parental protein coverage: | 69.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | RFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTA-AFQQGKIPPTPFSAPP |
.FYCD.C.TYLTH.SPS..KTH.S.RKHKENV.DY.Q.W.EEQ.Q.LI.K.T...FQQ..I.PTPFS.PP | |
Retrocopy | KFYCDRCNTYLTHKSPSEKKTHRSSRKHKENVRDYHQEWIEEQVQNLIEKSTM<VFQQERIAPTPFSVPP |
Parental | PAGAMIPPPPSLPGPPRPGMMP-APHMGGPPMMPMMGPPPPGM |
PAGAMIP..P..P..P..G..P....M.GP.....M...PPGM | |
Retrocopy | PAGAMIPQSPG-PSSPHMGALP<MMPMMGPLPPGTMPAGPPGM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .66 RPM |
SRP017611_liver | 0 .00 RPM | 6 .37 RPM |