Parental gene:

SNRPC, ENSAMEG00000000963

Aliases:None
Description:U1 small nuclear ribonucleoprotein C [Source:UniProtKB/TrEMBL;Acc:G1L297]
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192386.1:1898208..1910533(-)


>ENSAMEG00000000963
TTGAACAGCACTTCGGTGGATGGGCATCTGTTAACTGGTTGTCGTCTTCTCTTTTTCTTTGTTCCTCTTTCCAGGTTTTA
TTGTGACTACTGCGACACGTATCTCACCCATGACTCTCCATCTGTGAGAAAGACACACTGCAGTGGTAGGAAACACAAAG
AGAATGTGAAAGACTACTATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATCGACAAAACAACCGCTGCATTTCAA
CAAGGAAAGATACCTCCTACTCCATTCTCTGCTCCTCCTCCTGCAGGGGCAATGATCCCACCTCCCCCCAGTCTCCCGGG
TCCTCCTCGCCCTGGTATGATGCCAGCGCCCCATATGGGGGGCCCTCCCATGATGCCAATGATGGGCCCTCCTCCTCCTG
GGATGATGCCAGTGGGACCTGCTCCTGGAATGAGGCCACCTATGGGAGGCCACATGCCAATGATGCCTGGGCCCCCAATG
ATGAGACCTCCTGCCCGTCCCATGATGGTGCCCACTCGGCCAGGAATGACTCGACCAGACAGATAA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001231 possible_ortholog 3 retrogenes
retro_cfam_348, retro_cfam_402, retro_cfam_409,
Callithrix jacchus ENSCJAG00000015321 ortholog_one2one 16 retrogenes
retro_cjac_1009, retro_cjac_1015, retro_cjac_1064, retro_cjac_1750, retro_cjac_1937, retro_cjac_2014, retro_cjac_2395, retro_cjac_2456, retro_cjac_2785, retro_cjac_3056, retro_cjac_3110, retro_cjac_400, retro_cjac_4010, retro_cjac_617, retro_cjac_770, retro_cjac_873,
Cavia porcellus ENSCPOG00000008563 ortholog_one2one 3 retrogenes
retro_cpor_1529, retro_cpor_1540, retro_cpor_288,
Felis catus ENSFCAG00000005876 ortholog_one2one 12 retrogenes
retro_fcat_1008, retro_fcat_1088, retro_fcat_1265, retro_fcat_1545, retro_fcat_1599, retro_fcat_161, retro_fcat_1664, retro_fcat_1814, retro_fcat_446, retro_fcat_578, retro_fcat_627, retro_fcat_922,
Gorilla gorilla ENSGGOG00000012499 ortholog_one2one 7 retrogenes
retro_ggor_1169, retro_ggor_1333, retro_ggor_1364, retro_ggor_1981, retro_ggor_2577, retro_ggor_2699, retro_ggor_2842,
Myotis lucifugus ENSMLUG00000002488 ortholog_one2one 8 retrogenes
retro_mluc_1246, retro_mluc_1627, retro_mluc_2020, retro_mluc_2099, retro_mluc_2144, retro_mluc_2332, retro_mluc_735, retro_mluc_962,
Macaca mulatta ENSMMUG00000000869 ortholog_one2one 9 retrogenes
retro_mmul_1148, retro_mmul_1161, retro_mmul_1343, retro_mmul_1465, retro_mmul_1573, retro_mmul_1626, retro_mmul_2016, retro_mmul_2314, retro_mmul_678,
Monodelphis domestica ENSMODG00000013904 possible_ortholog 1 retrogene
retro_mdom_22,
Mustela putorius furo ENSMPUG00000003210 ortholog_one2one 7 retrogenes
retro_mputfur_1233, retro_mputfur_1260, retro_mputfur_1396, retro_mputfur_374, retro_mputfur_441, retro_mputfur_519, retro_mputfur_531,
Nomascus leucogenys ENSNLEG00000008392 ortholog_one2one 2 retrogenes
retro_nleu_2129, retro_nleu_99,
Oryctolagus cuniculus ENSOCUG00000026668 possible_ortholog 3 retrogenes
retro_ocun_1019, retro_ocun_184, retro_ocun_196,
Otolemur garnettii ENSOGAG00000008755 ortholog_one2many 9 retrogenes
retro_ogar_1040, retro_ogar_130, retro_ogar_1763, retro_ogar_183, retro_ogar_2434, retro_ogar_3064, retro_ogar_3322, retro_ogar_3377, retro_ogar_697,
Procavia capensis ENSPCAG00000016885 ortholog_one2one 1 retrogene
retro_pcap_34,
Pongo abelii ENSPPYG00000017272 ortholog_one2one 4 retrogenes
retro_pabe_1271, retro_pabe_3066, retro_pabe_3225, retro_pabe_915,
Pongo abelii ENSPPYG00000029902 possible_ortholog 3 retrogenes
retro_pabe_2367, retro_pabe_3397, retro_pabe_3524,
Pan troglodytes ENSPTRG00000018070 ortholog_one2one 6 retrogenes
retro_ptro_1037, retro_ptro_1283, retro_ptro_1937, retro_ptro_2249, retro_ptro_2606, retro_ptro_2883,
Pteropus vampyrus ENSPVAG00000015597 ortholog_one2one 1 retrogene
retro_pvam_1213,
Sarcophilus harrisii ENSSHAG00000000945 possible_ortholog 1 retrogene
retro_shar_112,
Ictidomys tridecemlineatus ENSSTOG00000013786 ortholog_one2one 3 retrogenes
retro_itri_1278, retro_itri_1374, retro_itri_861,
Tarsius syrichta ENSTSYG00000011216 ortholog_one2one 6 retrogenes
retro_tsyr_1198, retro_tsyr_1475, retro_tsyr_1746, retro_tsyr_185, retro_tsyr_260, retro_tsyr_690,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_149 76.54 87.85
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2. retro_amel_592 64.00 54.14
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3. retro_amel_988 61.97 75.69
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4. retro_amel_1237 77.70 75.14
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5. retro_amel_1249 74.78 62.43
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6. retro_amel_1522 69.17 64.09
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7. retro_amel_1523 73.04 62.43
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Download FASTA sequences of all ENSAMEG00000000963 retrocopies