RetrogeneDB ID: | retro_pcap_461 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_97911:2544..2991(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPCAG00000015342 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMD10 | ||
Ensembl ID: | ENSPCAG00000005221 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 [Source:HGNC Symbol;Acc:9555] |
Percent Identity: | 96.64 % |
Parental protein coverage: | 66.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEGSVSNLMVCNLAYNGKLEELKERILADKSLATTTDQYSRTVLHWACSAGHTEIVEFLLQLGVSVNDKD |
M.GSVSNLMVCNLAYNGKL.ELKERILADKSLATTTDQ.SRTVLHWACSAGHTEIVEFLLQLGVSVNDKD | |
Retrocopy | MAGSVSNLMVCNLAYNGKLKELKERILADKSLATTTDQDSRTVLHWACSAGHTEIVEFLLQLGVSVNDKD |
Parental | DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHFEA |
DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD.FEA | |
Retrocopy | DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDDFEA |
Parental | TALHRAAAK |
TALH.AAAK | |
Retrocopy | TALHWAAAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000012006 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007717 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000015068 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001902 | 5 retrocopies | |
Homo sapiens | ENSG00000101843 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000002969 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000002059 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014534 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016981 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014001 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010837 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006419 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000005221 | 1 retrocopy |
retro_pcap_461 ,
|
Pongo abelii | ENSPPYG00000020618 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000022169 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000003783 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000009920 | 13 retrocopies |