Parental gene:

ENSCPOG00000015068

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_46:13191227..13196561(+)


>ENSCPOG00000015068
ATGGAGGGGTGTGTATCTAACCTAGTGGTGTGTAACCTGGCCTATAGTGGGAAACTGGAAGAGTTAAAGGAGAGCATCCA
GGCCGACAAGTCCTTGGCTACTAGAACTGACCAGGACAGCCGAACTGCATTGCATTGGGCCTGTTCAGCAGGACATACTG
AGATTGTTGAGTTCTTGCTCCAACTGGGAGTACCAGTGAATGATAAAGATGATGCTGGTTGGTCTCCTCTTCATATTGCT
GCTTCTGCTGGGCGAGATGAGATTGTAAAGGCCCTTCTGGGAAAAGGTGCACAAGTGAATGCTGTCAATCAAAATGGTTG
TACTCCTCTCCATTATGCTGCTTCCAAAAACAGGCATGAGATTGCTGTTATGTTACTAGAAAATGGAGCTAATCCAGATG
CTAAGGACCATTATGAGGGTACAGCAATGCACCGGGCAGCAGCCAAGGGTAACTTGAAGATGATTCATATCCTTCTGTAC
TACAAAGCATCCACAAACATCCAAGACACTGAGGGTAACACTCCTCTACACTTAGCCTGTGATGAGGAGAGAGTAGAAGA
AGCAAAACTGCTGGCATCCCATGGAGCAAGTATTTATATTGAAAATAAAGAAGAAAAAACACCCTTGCAAGTGGCCAAAA
GTGGCTTGGGTTCAATACTCAAGAGAATAGTGGAAGGTTAA

Library Parental gene expression (RPM)
SRP017611_liver 5 .44 RPM
SRP017611_kidney 6 .70 RPM
SRP017611_brain 11 .16 RPM
SRP040447_lung 9 .84 RPM
SRP040447_skeletal_muscle 8 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000012006 ortholog_one2many 1 retrogene
retro_acar_134,
Callithrix jacchus ENSCJAG00000007717 possible_ortholog 1 retrogene
retro_cjac_2515,
Dasypus novemcinctus ENSDNOG00000001902 ortholog_one2many 5 retrogenes
retro_dnov_1194, retro_dnov_208, retro_dnov_705, retro_dnov_824, retro_dnov_835,
Homo sapiens ENSG00000101843 possible_ortholog 3 retrogenes
retro_hsap_1214, retro_hsap_2435, retro_hsap_2737,
Gorilla gorilla ENSGGOG00000002969 possible_ortholog 3 retrogenes
retro_ggor_1515, retro_ggor_1906, retro_ggor_945,
Microcebus murinus ENSMICG00000002059 ortholog_one2one 1 retrogene
retro_mmur_550,
Myotis lucifugus ENSMLUG00000014534 ortholog_one2one 1 retrogene
retro_mluc_2008,
Macaca mulatta ENSMMUG00000016981 ortholog_one2one 1 retrogene
retro_mmul_1290,
Nomascus leucogenys ENSNLEG00000014001 possible_ortholog 2 retrogenes
retro_nleu_243, retro_nleu_690,
Oryctolagus cuniculus ENSOCUG00000010837 possible_ortholog 1 retrogene
retro_ocun_793,
Otolemur garnettii ENSOGAG00000006419 possible_ortholog 1 retrogene
retro_ogar_213,
Procavia capensis ENSPCAG00000005221 ortholog_one2many 1 retrogene
retro_pcap_461,
Pongo abelii ENSPPYG00000020618 possible_ortholog 3 retrogenes
retro_pabe_1010, retro_pabe_1793, retro_pabe_2275,
Pan troglodytes ENSPTRG00000022169 possible_ortholog 3 retrogenes
retro_ptro_1407, retro_ptro_1851, retro_ptro_831,
Ictidomys tridecemlineatus ENSSTOG00000003783 possible_ortholog 3 retrogenes
retro_itri_1684, retro_itri_312, retro_itri_676,
Tarsius syrichta ENSTSYG00000009920 possible_ortholog 13 retrogenes
retro_tsyr_1160, retro_tsyr_1674, retro_tsyr_1684, retro_tsyr_1741, retro_tsyr_1830, retro_tsyr_1968, retro_tsyr_1989, retro_tsyr_2010, retro_tsyr_2138, retro_tsyr_2151, retro_tsyr_2167, retro_tsyr_674, retro_tsyr_803,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_358 95.13 99.56
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Download FASTA sequences of all ENSCPOG00000015068 retrocopies