RetrogeneDB ID: | retro_tsyr_1160 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_329594:125..557(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMD10 | ||
Ensembl ID: | ENSTSYG00000009920 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 [Source:HGNC Symbol;Acc:9555] |
Percent Identity: | 67.35 % |
Parental protein coverage: | 65.62 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEGCVSNLLVCNLAYSGKLEELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD |
M..CV.NLLVC.LA.SG.LEELKER..AD.SLAT.TDQD.RTA....C.AGH....EFL.QLGVPV.D.. | |
Retrocopy | MVRCVPNLLVCKLAHSGQLEELKERMPADESLATGTDQDGRTA---SCWAGHIVLIEFLRQLGVPVDDEY |
Parental | DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA |
.AGWSPL.IAASAG.DEIVKALL.K.AQ.NAVN..G.TPLHY.AS.NR.E..V...EGG.NP.A...YE. | |
Retrocopy | EAGWSPLPIAASAGWDEIVKALLRKAAQANAVNPKGGTPLHYVASINRNEFVVVAPEGGSNPEARVIYEG |
Parental | TAMHRAA |
TAMH.AA | |
Retrocopy | TAMHQAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000012006 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007717 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000015068 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001902 | 5 retrocopies | |
Homo sapiens | ENSG00000101843 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000002969 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000016981 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014001 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010837 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006419 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000005221 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020618 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000022169 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000003783 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000000542 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009920 | 13 retrocopies |