RetrogeneDB ID: | retro_ptro_1387 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 20:6084042..6085266(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SYNCRIP | ||
Ensembl ID: | ENSPTRG00000018393 | ||
Aliases: | None | ||
Description: | Synaptotagmin binding, cytoplasmic RNA interacting protein [Source:UniProtKB/TrEMBL;Acc:K7BNP6] |
Percent Identity: | 92.75 % |
Parental protein coverage: | 65.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNE |
MATEHVNGN.TEE.MDTT.AVIHSENFQTLLDAGL.QKVAEKLDEIYVAGLVAHS.LDERAIEALKEFNE | |
Retrocopy | MATEHVNGNDTEELMDTTFAVIHSENFQTLLDAGLSQKVAEKLDEIYVAGLVAHSHLDERAIEALKEFNE |
Parental | DGALAVLQQFK-DSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTT |
DGALAVLQQ.K.DSDLS.VQNKSAFLCGVMK.YRQREKQGTKVADSSKGPDEAKIKALLER.GYTLDVTT | |
Retrocopy | DGALAVLQQLK<DSDLSRVQNKSAFLCGVMKPYRQREKQGTKVADSSKGPDEAKIKALLERAGYTLDVTT |
Parental | GQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVT |
G.RKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGY.FVT | |
Retrocopy | GPRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYVFVT |
Parental | FCTKEAAQEAV-KLYNNHEIRSGKHIGVCISVANNRLFVGSIPKS-KTKEQILEEFS-KVTEGLTDVILY |
FCTKEAA.EAV.KLYNNHEIRSGKH.GVCISVANNRLFVGSIPKS.KTKEQILEEFS.KVTEGLTDVILY | |
Retrocopy | FCTKEAAREAV>KLYNNHEIRSGKHNGVCISVANNRLFVGSIPKS>KTKEQILEEFS>KVTEGLTDVILY |
Parental | HQPDDKKKNR-GFCF-LEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRN |
HQPD.K...R..F.F.L.YEDHKTAAQARRRLMSGKVKVWGNVGTVEWADP.EDPDPEVMAKVKVLFVRN | |
Retrocopy | HQPDEKXXXR<TFAF<LKYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPMEDPDPEVMAKVKVLFVRN |
Parental | LANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP |
LANTVTEEILEKAFSQFGKLE.VKKLKDY.FIHFDE.DGAVKAMEEMNGKDLEGENIEIVFAKP | |
Retrocopy | LANTVTEEILEKAFSQFGKLE*VKKLKDYPFIHFDE*DGAVKAMEEMNGKDLEGENIEIVFAKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 19 .75 RPM |
SRP007412_cerebellum | 0 .04 RPM | 31 .98 RPM |
SRP007412_heart | 0 .12 RPM | 44 .33 RPM |
SRP007412_kidney | 0 .34 RPM | 42 .71 RPM |
SRP007412_liver | 0 .10 RPM | 40 .30 RPM |
SRP007412_testis | 0 .63 RPM | 56 .49 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2410 |
Pongo abelii | retro_pabe_1775 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000018345 | 1 retrocopy | |
Homo sapiens | ENSG00000135316 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012575 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012879 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000601 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016819 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000324 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018393 | 1 retrocopy |
retro_ptro_1387 ,
|
Rattus norvegicus | ENSRNOG00000000204 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000004294 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000001061 | 1 retrocopy |