Parental gene:

SYNCRIP, ENSG00000135316

Aliases:SYNCRIP, GRY-RBP, GRYRBP, HNRNPQ, HNRPQ1, NSAP1, PP68, hnRNP-Q
Description:synaptotagmin binding, cytoplasmic RNA interacting protein [Source:HGNC Symbol;Acc:16918]
Organism:Human (Homo sapiens)
Coordinates:6:86318052..86353510(-)


>ENSG00000135316
ATGGCTACAGAACATGTTAATGGAAATGGTACTGAAGAGCCCATGGATACTACTTCTGCAGTTATCCATTCAGAAAATTT
TCAGACATTGCTTGATGCTGGTTTACCACAGAAAGTTGCTGAAAAACTAGATGAAATTTACGTTGCAGGGCTAGTTGCAC
ATAGTGATTTAGATGAAAGAGCTATTGAAGCTTTAAAAGAATTCAATGAAGACGGTGCATTGGCAGTTCTTCAACAGTTT
AAAGACAGTGATCTCTCTCATGTTCAGAACAAAAGTGCCTTTTTATGTGGAGTCATGAAGACTTACAGGCAGAGAGAAAA
ACAAGGGACCAAAGTAGCAGATTCTAGTAAAGGACCAGATGAGGCAAAAATTAAGGCACTCTTGGAAAGAACAGGCTACA
CACTTGATGTGACCACTGGACAGAGGAAGTATGGAGGACCACCTCCAGATTCCGTTTATTCAGGTCAGCAGCCTTCTGTT
GGCACTGAGATATTTGTGGGAAAGATCCCAAGAGATCTATTTGAGGATGAACTTGTTCCATTATTTGAGAAAGCTGGACC
TATATGGGATCTTCGTCTAATGATGGATCCACTCACTGGTCTCAATAGAGGTTATGCGTTTGTCACTTTTTGTACAAAAG
AAGCAGCTCAGGAGGCTGTTAAACTGTATAATAATCATGAAATTCGTTCTGGAAAACATATTGGTGTCTGCATCTCAGTT
GCCAACAATAGGCTTTTTGTGGGCTCTATTCCTAAGAGTAAAACCAAGGAACAGATTCTTGAAGAATTTAGCAAAGTAAC
AGAGGGTCTTACAGACGTCATTTTATACCACCAACCGGATGACAAGAAAAAAAACAGAGGCTTTTGCTTTCTTGAATATG
AAGATCACAAAACAGCTGCCCAGGCAAGGCGTAGGTTAATGAGTGGTAAAGTCAAGGTCTGGGGGAATGTTGGAACTGTT
GAATGGGCTGATCCTATAGAAGATCCTGATCCTGAGGTTATGGCAAAGGTAAAAGTGCTGTTTGTACGCAACCTTGCCAA
TACTGTAACAGAAGAGATTTTAGAAAAGGCATTTAGTCAGTTTGGGAAACTGGAACGAGTGAAGAAGTTAAAAGATTATG
CGTTCATTCATTTTGATGAGCGAGATGGTGCTGTCAAGGCTATGGAAGAAATGAATGGCAAAGACTTGGAGGGAGAAAAT
ATTGAAATTGTTTTTGCCAAGCCACCAGATCAGAAAAGGAAAGAAAGAAAAGCTCAGAGGCAAGCAGCAAAAAATCAAAT
GTATGACGATTACTACTATTATGGTCCACCTCATATGCCCCCTCCAACAAGAGGTCGAGGGCGTGGAGGTAGAGGTGGTT
ATGGATATCCTCCAGATTATTATGGATATGAAGATTATTATGATTATTATGGTTATGATTACCATAACTATCGTGGTGGA
TATGAAGATCCATACTATGGTTATGAAGATTTTCAAGTTGGAGCTAGAGGAAGGGGTGGTAGAGGAGCAAGGGGTGCTGC
TCCATCCAGAGGTCGTGGGGCTGCTCCTCCCCGCGGTAGAGCCGGTTATTCACAGAGAGGAGGTCCTGGATCAGCAAGAG
GCGTTCGAGGTGCGAGAGGAGGTGCCCAACAACAAAGAGGCCGCGGGGTACGTGGTGCGAGGGGTGGCCGCGGTGGAAAT
GTAGGAGGAAAGCGCAAAGCTGATGGGTACAACCAGCCAGATTCCAAGCGGCGCCAGACCAATAATCAGAACTGGGGCTC
CCAACCCATTGCTCAGCAACCGCTCCAAGGTGGTGATCATTCTGGTAACTATGGTTACAAATCTGAAAACCAGGAGTTTT
ATCAGGATACTTTTGGGCAACAGTGGAAGTAG

Library Parental gene expression (RPM)
bodymap2_liver 84 .16 RPM
bodymap2_lung 129 .38 RPM
bodymap2_breast 198 .56 RPM
bodymap2_adipose 201 .05 RPM
bodymap2_adrenal 225 .53 RPM
bodymap2_skeletal_muscle 183 .17 RPM
bodymap2_thyroid 309 .45 RPM
bodymap2_prostate 217 .85 RPM
bodymap2_colon 201 .67 RPM
bodymap2_testis 189 .91 RPM
bodymap2_brain 135 .18 RPM
bodymap2_heart 126 .03 RPM
bodymap2_white_blood_cells 219 .91 RPM
bodymap2_lymph_node 135 .83 RPM
bodymap2_ovary 285 .63 RPM
bodymap2_kidney 168 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000018345 ortholog_one2one 1 retrogene
retro_dnov_1927,
Homo sapiens ENSG00000125944 within_species_paralog 1 retrogene
retro_hsap_651,
Homo sapiens ENSG00000256453 within_species_paralog 1 retrogene
retro_hsap_1760,
Macaca mulatta ENSMMUG00000012575 ortholog_one2one 1 retrogene
retro_mmul_1843,
Nomascus leucogenys ENSNLEG00000012879 ortholog_one2one 1 retrogene
retro_nleu_162,
Oryctolagus cuniculus ENSOCUG00000000601 ortholog_one2one 1 retrogene
retro_ocun_1683,
Pongo abelii ENSPPYG00000016819 ortholog_one2one 1 retrogene
retro_pabe_1775,
Pan troglodytes ENSPTRG00000018393 ortholog_one2one 1 retrogene
retro_ptro_1387,
Rattus norvegicus ENSRNOG00000000204 ortholog_one2one 1 retrogene
retro_rnor_805,
Sus scrofa ENSSSCG00000004294 ortholog_one2one 1 retrogene
retro_sscr_436,
Vicugna pacos ENSVPAG00000001061 ortholog_one2one 1 retrogene
retro_vpac_391,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2410 93.72 65.49
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Download FASTA sequences of all ENSG00000135316 retrocopies