Parental gene:

SYNCRIP, ENSPTRG00000018393

Aliases:None
Description:Synaptotagmin binding, cytoplasmic RNA interacting protein [Source:UniProtKB/TrEMBL;Acc:K7BNP6]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:86194032..86220902(-)


>ENSPTRG00000018393
ATGGCTACAGAACATGTTAATGGAAATGGTACTGAAGAGCCCATGGATACTACTTCTGCAGTTATCCATTCAGAAAATTT
TCAGACATTGCTTGATGCTGGTTTACCACAGAAAGTTGCTGAAAAACTAGATGAAATTTACGTTGCAGGGCTAGTTGCAC
ATAGTGATTTAGATGAAAGAGCTATTGAAGCTTTAAAAGAATTCAATGAAGACGGTGCATTGGCAGTTCTTCAACAGTTT
AAAGACAGTGATCTCTCTCATGTTCAGAACAAAAGTGCCTTTTTATGTGGAGTCATGAAGACTTACAGGCAGAGAGAAAA
ACAAGGGACCAAAGTAGCAGATTCTAGTAAAGGACCAGATGAGGCAAAAATTAAGGCACTCTTGGAAAGAACAGGCTACA
CACTTGATGTGACCACTGGACAGAGGAAGTATGGAGGACCACCTCCAGATTCCGTTTATTCAGGTCAGCAGCCTTCTGTT
GGCACTGAGATATTTGTGGGAAAGATCCCAAGAGATCTATTTGAGGATGAACTTGTTCCATTATTTGAGAAAGCTGGACC
TATATGGGATCTTCGTCTAATGATGGATCCACTCACTGGTCTCAATAGAGGTTATGCGTTTGTCACTTTTTGTACAAAAG
AAGCAGCTCAGGAGGCTGTTAAACTGTATAATAATCATGAAATTCGTTCTGGAAAACATATTGGTGTCTGCATCTCAGTT
GCCAACAATAGGCTTTTTGTGGGCTCTATTCCTAAGAGTAAAACCAAGGAACAGATTCTTGAAGAATTTAGCAAAGTAAC
AGAGGGTCTTACAGACGTCATTTTATACCACCAACCGGATGACAAGAAAAAAAACAGAGGCTTTTGCTTTCTTGAATATG
AAGATCACAAAACAGCTGCCCAGGCAAGGCGTAGGTTAATGAGTGGTAAAGTCAAGGTCTGGGGGAATGTTGGAACTGTT
GAATGGGCTGATCCTATAGAAGATCCTGATCCTGAGGTTATGGCAAAGGTAAAAGTGCTGTTTGTACGCAACCTTGCCAA
TACTGTAACAGAAGAGATTTTAGAAAAGGCATTTAGTCAGTTTGGGAAACTGGAACGAGTGAAGAAGTTAAAAGATTATG
CATTCATTCATTTTGATGAGCGAGATGGTGCTGTCAAGGCTATGGAAGAAATGAATGGCAAAGACTTGGAGGGAGAAAAT
ATTGAAATTGTTTTTGCCAAGCCACCAGATCAGAAAAGGAAAGAAAGAAAAGCTCAGAGGCAAGCAGCAAAAAATCAAAT
GTATGACGATTACTACTATTATGGTCCACCTCATATGCCCCCTCCAACAAGAGGTCGAGGGCGTGGAGGTAGAGGTGGTT
ATGGATATCCTCCAGATTATTATGGATATGAAGATTATTATGATTATTATGGTTATGATTACCATAACTATCGTGGTGGA
TATGAAGATCCATACTATGGTTATGAAGATTTTCAAGTTGGAGCTAGAGGAAGGGGTGGTAGAGGAGCAAGGGGTGCTGC
TCCATCCAGAGGTCGTGGGGCTGCTCCTCCCCGCGGTAGAGCCGGTTATTCACAGAGAGGAGGTCCTGGATCAGCAAGAG
GCGTTCGAGGTGCGAGAGGAGGTGCCCAACAACAAAGAGGCCGCGGGGTACGTGGTGCGAGGGGTGGCCGCGGTGGAAAT
GTAGGAGGAAAGCGCAAAGCTGATGGGTACAACCAGCCAGATTCCAAGCGGCGCCAGACCAATAATCAGAACTGGGGCTC
CCAACCCATTGCTCAGCAACCGCTCCAAGGTGGTGATCATTCTGGTAACTATGGTTACAAATCTGAAAACCAGGAGTTTT
ATCAGGATACTTTTGGGCAACAGTGGAAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 19 .75 RPM
SRP007412_cerebellum 31 .98 RPM
SRP007412_heart 44 .33 RPM
SRP007412_kidney 42 .71 RPM
SRP007412_liver 40 .30 RPM
SRP007412_testis 56 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000018345 ortholog_one2one 1 retrogene
retro_dnov_1927,
Homo sapiens ENSG00000135316 ortholog_one2one 1 retrogene
retro_hsap_2410,
Macaca mulatta ENSMMUG00000012575 ortholog_one2one 1 retrogene
retro_mmul_1843,
Nomascus leucogenys ENSNLEG00000012879 ortholog_one2one 1 retrogene
retro_nleu_162,
Oryctolagus cuniculus ENSOCUG00000000601 ortholog_one2one 1 retrogene
retro_ocun_1683,
Pongo abelii ENSPPYG00000016819 ortholog_one2one 1 retrogene
retro_pabe_1775,
Pan troglodytes ENSPTRG00000000324 within_species_paralog 1 retrogene
retro_ptro_474,
Rattus norvegicus ENSRNOG00000000204 ortholog_one2one 1 retrogene
retro_rnor_805,
Sus scrofa ENSSSCG00000004294 ortholog_one2one 1 retrogene
retro_sscr_436,
Vicugna pacos ENSVPAG00000001061 ortholog_one2one 1 retrogene
retro_vpac_391,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1387 92.75 65.49
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Download FASTA sequences of all ENSPTRG00000018393 retrocopies