RetrogeneDB ID: | retro_ptro_914 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 14:51058940..51059340(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX5A | ||
Ensembl ID: | ENSPTRG00000007289 | ||
Aliases: | None | ||
Description: | Pan troglodytes mitochondrial cytochrome c oxidase subunit Va (COX5A), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001118913] |
Percent Identity: | 81.62 % |
Parental protein coverage: | 89.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AGPRGLLHSARTPG-PAAAIQSVRCYSHGSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPE |
.GPRGLLH.A.TP...A.AIQSVRCYSHGS.ETDEEFDA..VTYFNKPDIDAWEL.KG.NTLV.YD.VPE | |
Retrocopy | SGPRGLLHPAVTPT<LAVAIQSVRCYSHGSHETDEEFDAFRVTYFNKPDIDAWELCKGVNTLVGYDLVPE |
Parental | PK-IIDAALRACRRLNDFASTVRILEAVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV |
PK.I.DAAL.A.R.L.DFAS.V.ILEAVKDKAGP..EI.PYVIQELRPTLNELGISTPEELGLDKV | |
Retrocopy | PK<ITDAALWAFRQLYDFASAVGILEAVKDKAGPYREICPYVIQELRPTLNELGISTPEELGLDKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 82 .19 RPM |
SRP007412_cerebellum | 0 .00 RPM | 32 .51 RPM |
SRP007412_heart | 0 .00 RPM | 174 .38 RPM |
SRP007412_kidney | 0 .00 RPM | 84 .94 RPM |
SRP007412_liver | 0 .00 RPM | 41 .87 RPM |
SRP007412_testis | 0 .00 RPM | 71 .66 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1337 |
Gorilla gorilla | retro_ggor_1041 |