Parental gene: | ENSCJAG00000015613 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 10:17278130..17296390(-) |
>ENSCJAG00000015613
ATGCTGGGCGCCGCTCTCCGCCGCTGCGCTGTAGCCGCAACCGCCCGGGCCGGCCCTCGAGGCCTCCTGCACGAAACGGA
GTTCCCTCCTCCCATTGTAGCTATCCAGTCAGTTCGCTGCTATTCCCATGGGTCAAGTGAGACAGATGAGGAGTTTGATG
CTCGCTGGGTAACATACTTCAACAAGCCAGATATAGATGCCTGGGAATTGCGTAAAGGGATAAACACACTTGTTACCTAT
GATCTGGTTCCAGAGCCCAAAATCATTGATGCTGCTTTGCGGGCATGCAGACGGTTAAATGATTTCGCTAGTACAGTTCG
CATCCTAGAGGCTGTTAAGGACAAAGCAGGACCTCATAAGGAAATCTACCCATATGTCATCCAGGAACTTAGACCAACTT
TAAATGAACTGGGAATCTCCACTCCAGAGGAACTGGGCCTTGACAAAGTGTAA
ATGCTGGGCGCCGCTCTCCGCCGCTGCGCTGTAGCCGCAACCGCCCGGGCCGGCCCTCGAGGCCTCCTGCACGAAACGGA
GTTCCCTCCTCCCATTGTAGCTATCCAGTCAGTTCGCTGCTATTCCCATGGGTCAAGTGAGACAGATGAGGAGTTTGATG
CTCGCTGGGTAACATACTTCAACAAGCCAGATATAGATGCCTGGGAATTGCGTAAAGGGATAAACACACTTGTTACCTAT
GATCTGGTTCCAGAGCCCAAAATCATTGATGCTGCTTTGCGGGCATGCAGACGGTTAAATGATTTCGCTAGTACAGTTCG
CATCCTAGAGGCTGTTAAGGACAAAGCAGGACCTCATAAGGAAATCTACCCATATGTCATCCAGGAACTTAGACCAACTT
TAAATGAACTGGGAATCTCCACTCCAGAGGAACTGGGCCTTGACAAAGTGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 8 .91 RPM |
| SRP051959_skeletal_muscle | 94 .89 RPM |
| SRP051959_lymph_node | 8 .54 RPM |
| SRP051959_lung | 7 .19 RPM |
| SRP051959_liver | 22 .29 RPM |
| SRP051959_kidney | 22 .30 RPM |
| SRP051959_heart | 56 .46 RPM |
| SRP051959_colon | 19 .79 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000008643 | ortholog_one2many | 2 retrogenes | |
| Bos taurus | ENSBTAG00000017267 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000017977 | ortholog_many2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000006108 | ortholog_one2many | 4 retrogenes | |
| Cavia porcellus | ENSCPOG00000024832 | ortholog_one2many | 3 retrogenes | |
| Felis catus | ENSFCAG00000010587 | ortholog_one2many | 3 retrogenes | |
| Homo sapiens | ENSG00000178741 | ortholog_one2many | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000024426 | ortholog_one2many | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000006266 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000013942 | ortholog_one2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000013702 | ortholog_many2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000011677 | ortholog_one2many | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000028168 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000017314 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000000088 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000014708 | ortholog_many2many | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000005611 | ortholog_one2many | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000006652 | ortholog_many2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000007289 | ortholog_one2many | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000012957 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000018816 | ortholog_one2many | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000015941 | ortholog_one2many | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000008004 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_9 | 98.00 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_703 | 71.53 | 89.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_982 | 94.00 | 66.67 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2567 | 65.96 | 62.67 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_3167 | 94.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_3229 | 58.11 | 97.33 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000015613 retrocopies