RetrogeneDB ID: | retro_sara_143 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_4364:193901..194500(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSARG00000002747 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.65 % |
Parental protein coverage: | 81.22 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 6 |
Parental | PPNPTAAIAATTMPK-RKKQNQQQPP-HQQPPMPEREEPGDEEDGSLIGPPSLLGPPPMANGKPGDPKSA |
PPN.TAAIAAT.M.K..K.QNQQQ...HQQ.PM.E.E..G..EDGS.IGPPSLLG.P.MA.GKPG..KS. | |
Retrocopy | PPNLTAAIAATAMAK<VKRQNQQQSC<HQQIPMQEQEKSGNKEDGSPIGPPSLLGAPHMASGKPGNSKSV |
Parental | LHRGPPESRGPIIPPLLSL-PPPP-RGRGPIRGA-LGPRSTPYGRGWWG-VNAEPPFPGPGHGGPSRGGF |
LH...PESR.P.IP.LLS...P.P...R.P..G..LG....PY..G.W..VNA.PPF..PGHG..S.G.. | |
Retrocopy | LHGVRPESR-PVIPQLLSV>TPHPPSDRDPVCGG>LGSMTGPYCYG*WA>VNAQPPFLRPGHGSCSLGDS |
Parental | HKEQRNPRRLKSWSLIKNTCPPKDGPQVMEDKSGRPVCRHFA-TKGHCRYEDLCAFYHPGVNGPPL |
HKEQRNP.R.KSW.LIKNTCP.KDG.QV.E.KSG.PVCR.FA.T.G..RY...CAFYH.G..G..L | |
Retrocopy | HKEQRNPQRFKSWFLIKNTCPHKDGTQVTENKSGLPVCRQFA>T*GRSRYKI*CAFYHIGIDGASL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000022770 | 1 retrocopy | |
Felis catus | ENSFCAG00000025918 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000014604 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000008758 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013893 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005104 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004430 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000016409 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017929 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002747 | 2 retrocopies |
retro_sara_143 , retro_sara_9,
|
Ictidomys tridecemlineatus | ENSSTOG00000011829 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000166 | 2 retrocopies |