RetrogeneDB ID: | retro_tsyr_841 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_214230:2259..2823(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRR3 | ||
Ensembl ID: | ENSTSYG00000000166 | ||
Aliases: | None | ||
Description: | proline rich 3 [Source:HGNC Symbol;Acc:21149] |
Percent Identity: | 73.94 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MPKRKKQNQHQPLPPQQPPLPERGETGDEEDENPIGPPSLLGPPPMANGKPGDPKSVLYRGTPGPRGPMI |
MPK.K.QNQ..PL...QPPLP...ETGDEEDENPIGP.SLLGPPPM.NGKPGDP.....RG.PG.RGP.I | |
Retrocopy | MPKQKQQNQYKPLLQEQPPLPDWEETGDEEDENPIGPTSLLGPPPMVNGKPGDPSQLFHRGRPGSRGPII |
Parental | PPLLSLPPPPRGRASIRGGFGPRSGPYGRGWWGVSAEPPFPGPGHGGPSRGSFHKEQRNPRRLKSWSLIK |
.PLLSL.PPP.G..SI.G.FG.RSGPY..G.WG.SA...F.GPGHGGPSRGSF.KEQ.NPRRLK.WSLIK | |
Retrocopy | APLLSLLPPPQGKGSIPGCFGSRSGPYSCG*WGLSAGHSFLGPGHGGPSRGSFLKEQGNPRRLKTWSLIK |
Parental | NTCPPKDDPQVIEDKSGRPVCRHFAKKGHCRYEDLCAFYHPGVNGPPL |
N.CP.KDDPQVIEDKS..PVC.HFAKKG.C..EDLCAFYHPG..GPPL | |
Retrocopy | NICPSKDDPQVIEDKSVCPVC*HFAKKGYCGHEDLCAFYHPGTSGPPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000022770 | 1 retrocopy | |
Felis catus | ENSFCAG00000025918 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000014604 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000008758 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013893 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005104 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004430 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000016409 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017929 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002747 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000011829 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000166 | 2 retrocopies |
retro_tsyr_308, retro_tsyr_841 ,
|