RetrogeneDB ID: | retro_shar_571 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL850207.1:120912..121223(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL18 | ||
Ensembl ID: | ENSSHAG00000006564 | ||
Aliases: | None | ||
Description: | ribosomal protein L18 [Source:HGNC Symbol;Acc:10310] |
Percent Identity: | 55.96 % |
Parental protein coverage: | 56.84 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLA-RRTNSTFNKVVLKRLFMSRTNRPPLSLSRMIRKM |
GVDI.H....KV..K.P.SQDIYL.LLVKLY.F...R........V..K.L..S.TN..P.SL...IRKM | |
Retrocopy | GVDICH-MNGKVQNKMPNSQDIYLQLLVKLYQFHT<RTSSTFYKVVL-KKLLLS*TNW*PQSLFKIIRKM |
Parental | KLPGRENKTAVVVGTVTDDVRIQDVPKLKEQVCALRVTS |
K.PG...KTA.VVGTVT....IQ.VPKLK..VC.L.VTS | |
Retrocopy | KMPGKRKKTAAVVGTVTNNMKIQNVPKLK--VCGLHVTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |