Parental gene:

RPL18, ENSGGOG00000024878

Aliases:None
Description:60S ribosomal protein L18 [Source:UniProtKB/TrEMBL;Acc:G3SGL2]
Organism:Gorilla (Gorilla gorilla)
Coordinates:19:45899944..45903774(-)


>ENSGGOG00000024878
ATGGGAGTGGACATCCGCCACAACAAGGACCGAAAGGTTCGGCGCAAGGAGCCCAAGAGCCAGGATATCTACCTGAGGCT
GTTGGTCAAGTTATACAGGTTTCTGGCCAGAAGAACCAACTCCACATTCAACCAGGTTGTGTTGAAGAGGTTGTTTATGA
GTCGCACCAACCGGCCGCCTCTGTCCCTTTCCCGGATGATCCGGAAGATGAAGCTTCCTGGCCGGGAAAACAAGACGGCT
GTGGTTGTGGGGACCATAACTGATGATGTGCGGGTTCAGGAGGTGCCCAAACTGAAGGTATGTGCACTGCGCGTGACCAG
CCGGGCCCGCAGCCGCATCCTCAGGGCAGGGGGCAAGATCCTCACTTTTGACCAGCTGGCCCTGGACTCCCCTAAGGGCC
GCGGCACTGTCCTGCTCTCTGGTCCTCGCAAGGGCCGAGAGGTGTACCGGCATTTCGGCAAGGCCCCAGGAACCCCGCAC
AGCCACACCAAACCCTACGTCCGCTCCAAGGGCCGGAAGTTCGAGCGTGCCAGAGGCCGACGGGCCAGCCGAGGCTACAA
AAACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 76 .82 RPM
SRP007412_cerebellum 138 .80 RPM
SRP007412_heart 92 .37 RPM
SRP007412_kidney 157 .59 RPM
SRP007412_liver 207 .12 RPM
SRP007412_testis 113 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014872 possible_ortholog 3 retrogenes
Bos taurus ENSBTAG00000015388 possible_ortholog 1 retrogene
Canis familiaris ENSCAFG00000003967 possible_ortholog 7 retrogenes
Choloepus hoffmanni ENSCHOG00000009140 ortholog_one2many 6 retrogenes
Callithrix jacchus ENSCJAG00000000377 ortholog_one2many 4 retrogenes
Cavia porcellus ENSCPOG00000026334 possible_ortholog 4 retrogenes
Equus caballus ENSECAG00000021927 possible_ortholog 3 retrogenes
Erinaceus europaeus ENSEEUG00000015872 possible_ortholog 5 retrogenes
Echinops telfairi ENSETEG00000013157 possible_ortholog 6 retrogenes
Felis catus ENSFCAG00000008652 possible_ortholog 4 retrogenes
Homo sapiens ENSG00000063177 possible_ortholog 11 retrogenes
Loxodonta africana ENSLAFG00000031267 possible_ortholog 1 retrogene
Macropus eugenii ENSMEUG00000000640 ortholog_one2many 1 retrogene
Myotis lucifugus ENSMLUG00000009286 possible_ortholog 12 retrogenes
Macaca mulatta ENSMMUG00000022158 possible_ortholog 3 retrogenes
Monodelphis domestica ENSMODG00000014099 ortholog_many2many 1 retrogene
Mustela putorius furo ENSMPUG00000003891 possible_ortholog 4 retrogenes
Mus musculus ENSMUSG00000059070 possible_ortholog 11 retrogenes
Nomascus leucogenys ENSNLEG00000004537 possible_ortholog 11 retrogenes
Otolemur garnettii ENSOGAG00000003562 possible_ortholog 16 retrogenes
Oreochromis niloticus ENSONIG00000006539 ortholog_one2many 1 retrogene
Pongo abelii ENSPPYG00000010206 possible_ortholog 6 retrogenes
Pan troglodytes ENSPTRG00000011245 possible_ortholog 10 retrogenes
Pteropus vampyrus ENSPVAG00000009524 possible_ortholog 10 retrogenes
Rattus norvegicus ENSRNOG00000021035 possible_ortholog 14 retrogenes
Sarcophilus harrisii ENSSHAG00000006564 ortholog_one2many 2 retrogenes
Sus scrofa ENSSSCG00000025928 possible_ortholog 5 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000012258 possible_ortholog 5 retrogenes
Tupaia belangeri ENSTBEG00000001594 possible_ortholog 18 retrogenes
Tursiops truncatus ENSTTRG00000008187 possible_ortholog 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_847 72.65 61.70
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2. retro_ggor_937 69.07 51.60
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3. retro_ggor_1038 73.20 51.60
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4. retro_ggor_1280 87.30 100.00
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5. retro_ggor_2200 77.08 100.00
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6. retro_ggor_2550 85.26 100.00
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7. retro_ggor_2624 85.42 76.06
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Download FASTA sequences of all ENSGGOG00000024878 retrocopies