RetrogeneDB ID: | retro_sscr_1089 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | GL893305.1:60320..60569(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUMO3 | ||
Ensembl ID: | ENSSSCG00000024026 | ||
Aliases: | None | ||
Description: | small ubiquitin-like modifier 3 [Source:HGNC Symbol;Acc:11124] |
Percent Identity: | 68.24 % |
Parental protein coverage: | 79.81 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | EEKPKEGVKTENDH-INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFDGQPINEAD |
.EKPKEGVK.EN....N....G.DGSVVQFKIKR.T.LSKLMKAYCE.Q..LS.R.I.F..D.QPINE.D | |
Retrocopy | KEKPKEGVKAENNN<SN*SEDGRDGSVVQFKIKRQTTLSKLMKAYCE*Q>SLSRRKI*FQTDSQPINETD |
Parental | TPAQLEMEDEDTIDV |
TPA.LE..DED.IDV | |
Retrocopy | TPAELEIKDEDAIDV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 122 .64 RPM |
SRP014902_testis | 0 .00 RPM | 86 .00 RPM |
SRP018288_heart | 0 .00 RPM | 19 .44 RPM |
SRP018288_kidney | 0 .00 RPM | 72 .20 RPM |
SRP018288_liver | 0 .00 RPM | 66 .20 RPM |
SRP018288_lung | 0 .00 RPM | 47 .45 RPM |
SRP018856_adipose | 0 .00 RPM | 54 .81 RPM |
SRP035408_brain | 0 .00 RPM | 121 .80 RPM |
SRP035408_liver | 0 .00 RPM | 68 .99 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_260 |