RetrogeneDB ID: | retro_btau_580 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 15:44237475..44237787(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000004771 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUMO3 | ||
Ensembl ID: | ENSBTAG00000017321 | ||
Aliases: | SUMO3, SUMO-3 | ||
Description: | Small ubiquitin-related modifier 3 [Source:UniProtKB/Swiss-Prot;Acc:Q17QV3] |
Percent Identity: | 97.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD |
MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD | |
Retrocopy | MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD |
Parental | TPAQLEMEDEDTIDVFQQQTGGSRVASCLLGSGL |
TPAQLEME.EDTID.FQQQ.GGSRVASCLLGSGL | |
Retrocopy | TPAQLEMENEDTIDMFQQQMGGSRVASCLLGSGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 33 .52 RPM |
ERP005899_muscle | 0 .00 RPM | 35 .42 RPM |
SRP017611_brain | 0 .00 RPM | 47 .64 RPM |
SRP017611_kidney | 0 .06 RPM | 62 .12 RPM |
SRP017611_liver | 0 .00 RPM | 32 .62 RPM |
SRP030211_testis | 0 .07 RPM | 83 .67 RPM |