RetrogeneDB ID: | retro_sscr_320 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 13:75111715..75112013(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUMO3 | ||
Ensembl ID: | ENSSSCG00000024026 | ||
Aliases: | None | ||
Description: | small ubiquitin-like modifier 3 [Source:HGNC Symbol;Acc:11124] |
Percent Identity: | 73. % |
Parental protein coverage: | 95.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MSEEKPKEGVKTE-NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINEA |
M..EKP.EGVK.E.NDHINLKV.GQD.SVVQFKIKR.TPL.KLMKAYCE...LS.RQ.R.R.D.QPINE. | |
Retrocopy | MADEKPQEGVKRE>NDHINLKVMGQDASVVQFKIKRQTPLNKLMKAYCE*HSLSVRQMRCRLDRQPINEP |
Parental | DTPAQLEMEDEDTIDVFQQQTGGSRRAGRL |
DT.AQLEME.E.T.DVFQQQTGG....G.L | |
Retrocopy | DTLAQLEMEGENTTDVFQQQTGGVY*KGNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 122 .64 RPM |
SRP014902_testis | 0 .00 RPM | 86 .00 RPM |
SRP018288_heart | 0 .00 RPM | 19 .44 RPM |
SRP018288_kidney | 0 .00 RPM | 72 .20 RPM |
SRP018288_liver | 0 .00 RPM | 66 .20 RPM |
SRP018288_lung | 0 .00 RPM | 47 .45 RPM |
SRP018856_adipose | 0 .00 RPM | 54 .81 RPM |
SRP035408_brain | 0 .00 RPM | 121 .80 RPM |
SRP035408_liver | 0 .00 RPM | 68 .99 RPM |