RetrogeneDB ID: | retro_sscr_343 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 13:145921386..145921733(+) | ||
Located in intron of: | ENSSSCG00000028717 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSSCG00000009303 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 69.17 % |
Parental protein coverage: | 73.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | GMGTVQKGMPHKCYHGKT-GRVYNVTQHAVGIVVNKQVKGKILAKRI-NVRIEHI-KHSKSRDSFLKRVK |
GMGTV.KGMP..C.HGKT.GR..NVTQ..VG...NK......L.....NV..EHI.KH.KS.DSFLK.VK | |
Retrocopy | GMGTVGKGMPRRCHHGKT<GRDCNVTQYDVGTAGNK-LTARFLPREL<NVCVEHI>KHFKSQDSFLKPVK |
Parental | ENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA |
ENDQKKKEAKEKGTWVQ.KRQ.AP.REA.F.R.NGKEPELLEPI.YEF.A | |
Retrocopy | ENDQKKKEAKEKGTWVQWKRQLAPLREAQFLRANGKEPELLEPILYEFVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 78 .71 RPM |
SRP014902_testis | 0 .00 RPM | 260 .12 RPM |
SRP018288_heart | 0 .00 RPM | 401 .86 RPM |
SRP018288_kidney | 0 .00 RPM | 331 .87 RPM |
SRP018288_liver | 0 .00 RPM | 309 .27 RPM |
SRP018288_lung | 0 .00 RPM | 406 .69 RPM |
SRP018856_adipose | 0 .02 RPM | 620 .58 RPM |
SRP035408_brain | 0 .00 RPM | 438 .42 RPM |
SRP035408_liver | 0 .00 RPM | 389 .99 RPM |