RetrogeneDB ID:

retro_nleu_713

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397270.1:42458706..42459014(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL21
Ensembl ID:ENSNLEG00000000327
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_713
GAAAACGGAGTTGTACCTTTGACAACATAAGTGCGTATCTACAAGAAAGGCAATAATGTAGACACTGAGGGAATGGGTAC
TGTCCAAAAAGAAATGCCCCACAAATGTCACCATGGCAAAACTAAAAGAGTCTACAAAGTTACCTAGCATGCTGTTGGCA
TCATTGTAAACAAACAAGTTAAGGGCAAGATTCTTGCCGAGAGAATTAATATGCATGTTGGGCATATTAAGCACTCTAAG
AGCCAAGACGATTTCCTGAAAGTGTGTGAAGGAAAATAACCAGAATAAAGAGGGAAGCTAAAAAGAAA

ORF - retro_nleu_713 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.12 %
Parental protein coverage: 63.75 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRIN
..GVVPL.T..RIYKKG..VD..GMGTVQK.MPHKC.HGKT.RVY.VT.HAVGI.VNKQVKGKILA.RIN
RetrocopyENGVVPLTT*VRIYKKGNNVDTEGMGTVQKEMPHKCHHGKTKRVYKVT*HAVGIIVNKQVKGKILAERIN
ParentalVRIEHIKHSKSRDSFL-KRVKENDQK-KKEAKEK
....HIKHSKS.D.FL.K.VKEN.Q..K.EAK.K
RetrocopyMHVGHIKHSKSQDDFL>KCVKENNQN>KREAKKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_713 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 371 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000031691 retrocopy
Bos taurus ENSBTAG000000016485 retrocopies
Callithrix jacchus ENSCJAG000000193551 retrocopy
Cavia porcellus ENSCPOG000000087843 retrocopies
Felis catus ENSFCAG000000067501 retrocopy
Latimeria chalumnae ENSLACG000000126781 retrocopy
Loxodonta africana ENSLAFG0000000367711 retrocopies
Microcebus murinus ENSMICG0000001475454 retrocopies
Myotis lucifugus ENSMLUG0000001009346 retrocopies
Macaca mulatta ENSMMUG000000233682 retrocopies
Monodelphis domestica ENSMODG000000089231 retrocopy
Mus musculus ENSMUSG00000041453101 retrocopies
retro_mmus_1012, retro_mmus_1046, retro_mmus_1057, retro_mmus_1083, retro_mmus_1123, retro_mmus_1199, retro_mmus_1287, retro_mmus_1354, retro_mmus_1461, retro_mmus_1475, retro_mmus_1529, retro_mmus_1561, retro_mmus_1572, retro_mmus_1596, retro_mmus_1617, retro_mmus_1641, retro_mmus_1644, retro_mmus_17, retro_mmus_1714, retro_mmus_1739, retro_mmus_1762, retro_mmus_1797, retro_mmus_1848, retro_mmus_1860, retro_mmus_1862, retro_mmus_1875, retro_mmus_1897, retro_mmus_1915, retro_mmus_1931, retro_mmus_1936, retro_mmus_1994, retro_mmus_2042, retro_mmus_2049, retro_mmus_2101, retro_mmus_2130, retro_mmus_2176, retro_mmus_2179, retro_mmus_2185, retro_mmus_2214, retro_mmus_2233, retro_mmus_2237, retro_mmus_2238, retro_mmus_2279, retro_mmus_2309, retro_mmus_2312, retro_mmus_2335, retro_mmus_2344, retro_mmus_2395, retro_mmus_2447, retro_mmus_2517, retro_mmus_2567, retro_mmus_2585, retro_mmus_2598, retro_mmus_266, retro_mmus_2662, retro_mmus_2698, retro_mmus_2707, retro_mmus_2778, retro_mmus_2808, retro_mmus_2853, retro_mmus_2874, retro_mmus_2945, retro_mmus_2980, retro_mmus_3035, retro_mmus_3055, retro_mmus_3085, retro_mmus_3103, retro_mmus_3112, retro_mmus_3220, retro_mmus_3252, retro_mmus_3261, retro_mmus_3295, retro_mmus_3318, retro_mmus_3328, retro_mmus_333, retro_mmus_3341, retro_mmus_3446, retro_mmus_3545, retro_mmus_3581, retro_mmus_3712, retro_mmus_397, retro_mmus_400, retro_mmus_401, retro_mmus_598, retro_mmus_601, retro_mmus_606, retro_mmus_663, retro_mmus_734, retro_mmus_735, retro_mmus_758, retro_mmus_782, retro_mmus_806, retro_mmus_835, retro_mmus_862, retro_mmus_883, retro_mmus_918, retro_mmus_932, retro_mmus_940, retro_mmus_957, retro_mmus_993, retro_mmus_998,
Nomascus leucogenys ENSNLEG00000000327 6 retrocopies
Oryctolagus cuniculus ENSOCUG0000000250610 retrocopies
Pteropus vampyrus ENSPVAG0000000007782 retrocopies
Rattus norvegicus ENSRNOG0000000095713 retrocopies
Sarcophilus harrisii ENSSHAG0000000084511 retrocopies
Sus scrofa ENSSSCG000000093039 retrocopies
Vicugna pacos ENSVPAG0000000620613 retrocopies



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